View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16430_high_6 (Length: 325)

Name: NF16430_high_6
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16430_high_6
NF16430_high_6
[»] chr5 (9 HSPs)
chr5 (1-311)||(38816628-38816932)
chr5 (136-210)||(19820428-19820503)
chr5 (136-201)||(22013364-22013429)
chr5 (162-290)||(22423764-22423895)
chr5 (243-292)||(8420075-8420124)
chr5 (238-290)||(9929668-9929720)
chr5 (262-292)||(24906250-24906280)
chr5 (136-209)||(42469171-42469245)
chr5 (161-201)||(15410492-15410532)
[»] chr7 (9 HSPs)
chr7 (136-209)||(27944991-27945065)
chr7 (179-260)||(29787354-29787435)
chr7 (136-201)||(24105629-24105693)
chr7 (175-258)||(32308109-32308194)
chr7 (179-241)||(19206043-19206107)
chr7 (181-290)||(11700798-11700909)
chr7 (158-210)||(11722132-11722185)
chr7 (262-291)||(17852091-17852120)
chr7 (262-290)||(15680900-15680928)
[»] chr6 (14 HSPs)
chr6 (158-258)||(10294079-10294181)
chr6 (151-201)||(9027143-9027193)
chr6 (136-201)||(853903-853968)
chr6 (136-201)||(8365563-8365628)
chr6 (151-210)||(5000660-5000720)
chr6 (243-290)||(426478-426525)
chr6 (243-290)||(5732474-5732521)
chr6 (138-201)||(12696277-12696339)
chr6 (225-290)||(8805524-8805592)
chr6 (262-292)||(34073276-34073306)
chr6 (249-290)||(2117134-2117175)
chr6 (136-201)||(3398569-3398634)
chr6 (174-210)||(19040340-19040377)
chr6 (161-201)||(9658854-9658894)
[»] chr2 (11 HSPs)
chr2 (136-200)||(33519736-33519800)
chr2 (136-246)||(21782817-21782927)
chr2 (136-201)||(20539718-20539783)
chr2 (243-290)||(19536361-19536408)
chr2 (243-290)||(19574031-19574078)
chr2 (243-289)||(18255945-18255991)
chr2 (243-289)||(34691770-34691816)
chr2 (243-289)||(34714182-34714228)
chr2 (136-201)||(19536442-19536507)
chr2 (137-201)||(21624217-21624281)
chr2 (254-290)||(42511322-42511358)
[»] chr8 (4 HSPs)
chr8 (136-201)||(25192391-25192456)
chr8 (158-258)||(22651948-22652050)
chr8 (153-258)||(29510289-29510396)
chr8 (136-201)||(126393-126457)
[»] chr1 (11 HSPs)
chr1 (237-290)||(48547938-48547991)
chr1 (151-201)||(40917716-40917766)
chr1 (152-201)||(398809-398858)
chr1 (159-210)||(6427323-6427375)
chr1 (135-201)||(5376544-5376609)
chr1 (158-210)||(20157384-20157437)
chr1 (186-256)||(34371714-34371785)
chr1 (175-210)||(2896155-2896191)
chr1 (175-210)||(17831565-17831601)
chr1 (175-210)||(36878450-36878486)
chr1 (149-201)||(48040506-48040558)
[»] chr3 (10 HSPs)
chr3 (136-210)||(8842280-8842354)
chr3 (177-260)||(8039818-8039903)
chr3 (136-210)||(8383207-8383282)
chr3 (254-292)||(4466538-4466576)
chr3 (262-292)||(5440965-5440995)
chr3 (254-292)||(13807237-13807275)
chr3 (149-247)||(5441029-5441128)
chr3 (145-201)||(10335330-10335386)
chr3 (137-201)||(14618732-14618796)
chr3 (254-290)||(27505334-27505370)
[»] scaffold0223 (1 HSPs)
scaffold0223 (136-201)||(20122-20187)
[»] scaffold0168 (3 HSPs)
scaffold0168 (229-290)||(21217-21278)
scaffold0168 (229-290)||(21088-21149)
scaffold0168 (229-290)||(21346-21407)
[»] scaffold0306 (1 HSPs)
scaffold0306 (135-210)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (135-210)||(21902-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (151-201)||(8763-8813)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-201)||(241559-241609)
[»] scaffold0450 (1 HSPs)
scaffold0450 (262-290)||(8564-8592)
[»] scaffold0044 (1 HSPs)
scaffold0044 (176-260)||(53170-53256)
[»] scaffold0027 (1 HSPs)
scaffold0027 (244-292)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (246-290)||(18844423-18844467)
chr4 (254-290)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38816932 - 38816628
Alignment:
Q  1 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  101 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||||||||||||||||||||||     
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacaccgctaataat 38816740  T
Q  200 ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcg 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38816739 ttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcg 38816640  T
Q  300 tgaatcgtgata 311  Q
    ||||||||||||    
T  38816639 tgaatcgtgata 38816628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||| |||||||||||||||| |||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 22013364 - 22013429
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||||||||||| ||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatt 22013429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  162 acacggcacgggtactgacacgccgacaccgctaataatt-gagaaaatcgctatatttcattataattatgt--gtcggtgtggtgtcggtgtc-ggac 257  Q
    ||||| ||||| ||||||||| | |||||  ||||||||| ||||||||| | ||| |||| ||||||||| |  |||||||| ||||||||||| ||||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  258 atggctaattcgaggagtgtccgtgcttcatag 290  Q
    | | ||||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  238 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaat 209  Q
    |||||||||||| | |||||| ||| ||||| ||||| || |||||||||||||| | |||||| ||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 15410532 - 15410492
Alignment:
Q  161 gacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatt 15410492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaat 209  Q
    |||||||||||| |||||||| ||||||||| |||||  ||||||||||||||||| ||||||| ||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 29787435 - 29787354
Alignment:
Q  179 acacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 260  Q
    ||||||||||||||||||||| ||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 24105629 - 24105693
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||| ||||||| | |||||||| |||||  |||||||||||||||| ||||||||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatt 24105693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 32308109 - 32308194
Alignment:
Q  175 actgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||||||||||||||||||||| ||||||||||| | ||| |||| | ||||  |||||||| |||| |||||||||| |||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggaca 32308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 19206043 - 19206107
Alignment:
Q  179 acacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 241  Q
    ||||||||||||||||||||| ||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 11700798 - 11700909
Alignment:
Q  181 acgccgacaccgctaataatt-gagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgt 277  Q
    |||| ||||||| |||||||| || |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| ||||||||||    
T  11700798 acgctgacaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgt 11700896  T
Q  278 ccgtgcttcatag 290  Q
    || || |||||||    
T  11700897 ccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  158 ccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||| |||||  |||||||||||||||||||||| || |||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagt 291  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 10294079 - 10294181
Alignment:
Q  158 ccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 254  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||| |||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  255 gaca 258  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 9027143 - 9027193
Alignment:
Q  151 acggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatt 9027193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 853968 - 853903
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    ||||||| |||| |||||||| ||||||||| ||||| | |||||||||||||||  |||||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatt 853903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 8365628 - 8365563
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||| |||||||| || |||||| |||||  ||||||||||||||||  |||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatt 8365563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  151 acggactccggacacggcacgggtactgacacgccgacaccgctaataatt-gagaaaatc 210  Q
    |||||| ||||||| | ||||| |||||||||| ||||||||||||||||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 12696277 - 12696339
Alignment:
Q  138 atgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||| |||||||| | ||||||| |||||  |||||||||||||||| ||||||||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatt 12696339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 8805592 - 8805524
Alignment:
Q  225 taattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||||||||| ||||| |    || ||||||| ||||| |||||||||||||||||||||||    
T  8805592 taattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  249 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 3398569 - 3398634
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||| | ||||||||  || ||||| |||||  |||||||||||||||| ||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatt 3398634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 19040340 - 19040377
Alignment:
Q  174 tactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19040340 tactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 9658854 - 9658894
Alignment:
Q  161 gacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatt 9658894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataat 200  Q
    |||||||||||| |||||||| ||||||||| | ||| ||||||||| |||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataattatgtg 234  Q
    ||||||||||||||||| ||| | ||||||| |||    |||||||||||||||| |||||||| ||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  235 tcggtgtggtgt 246  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 20539783 - 20539718
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||| |||||||| | ||||||| |||||  ||||||||| |||||| ||||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatt 20539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 19536507 - 19536442
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||  |||||||| ||||||||| |||||  | ||||||||||||||  |||||||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatt 19536442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 21624217 - 21624281
Alignment:
Q  137 tatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||| || |||||||| ||| ||||| ||| |  |||||||||||||||| ||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataatt 21624281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 25192456 - 25192391
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||||||||||||  ||||||||  ||||  |||||||||||||||| ||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatt 25192391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 22651948 - 22652050
Alignment:
Q  158 ccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcg 254  Q
    ||||||||| |||||  |||||||||||||||| |||||||| |||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgtcg 22652046  T
Q  255 gaca 258  Q
    ||||    
T  22652047 gaca 22652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 29510396 - 29510289
Alignment:
Q  153 ggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 249  Q
    |||| ||||||||| |||||  |||||||||||||||| |||||||| |||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  250 tgtcggaca 258  Q
    |||||||||    
T  29510297 tgtcggaca 29510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 126457 - 126393
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||| ||||| || | |||||||  |||| |||||||||||| |||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatt 126393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  237 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 40917716 - 40917766
Alignment:
Q  151 acggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||| ||||||||| ||||| ||||||||||||||||| ||||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatt 40917766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 398858 - 398809
Alignment:
Q  152 cggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    ||||| ||||||||| |||||  |||||||||||||||||||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatt 398809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  159 cggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||||  ||||||||||| ||||||||||||| |||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 5376609 - 5376544
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    ||||||| ||||| |||| || |||||||||| |||||  ||| |||||||||||||||||||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatt 5376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20157437 - 20157384
Alignment:
Q  158 ccggacacggcacgggtactgacacgccgacaccgctaataat-tgagaaaatc 210  Q
    ||||||||| |||||| ||||||||  |||||||||||||||| ||||||||||    
T  20157437 ccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatc 20157384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 34371714 - 34371785
Alignment:
Q  186 gacaccgctaataattgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcgga 256  Q
    ||||||||||||||||||||||||| | ||| |||| | ||||  ||||||||||||| |||| |||||||||    
T  34371714 gacaccgctaataattgagaaaatcac-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcgga 34371785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 2896191 - 2896155
Alignment:
Q  175 actgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2896191 actgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  175 actgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  175 actgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 48040558 - 48040506
Alignment:
Q  149 atacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||| ||||||||| |||||  |||||||||||||||| | ||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatt 48040506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 8842280 - 8842354
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataattgagaaaatc 210  Q
    |||||||||||| |||||||| ||||| ||| |||||  | ||||| |||||||||||||||||||  |||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattttgaaaatc 8842354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 8039903 - 8039818
Alignment:
Q  177 tgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 260  Q
    ||||||||| ||||||||||||| ||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039903 tgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||| |||||| | |||||| | ||||||| |||||  | ||||||||||||||||||||||| |||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  149 atacggac-tccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 246  Q
    |||||||| |||||||||| ||| |  |||||||||||| ||||||||| || ||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 10335386 - 10335330
Alignment:
Q  145 acgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    ||||| |||||| ||||||||| |||||  ||||||||||||||||  |||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatt 10335330  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 14618732 - 14618796
Alignment:
Q  137 tatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||  ||||||| || |||||| |||||| ||||| |||| |||||| |||||||||    
T  14618732 tatgaagcacgggtacggacaccagacacgacacgggcactgagacgctgacacccctaataatt 14618796  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

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Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 20122 - 20187
Alignment:
Q  136 ctatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||||||||  |||||||| ||||||||| |||||  | |||||||||||||| ||||||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatt 20187  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  229 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  229 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  229 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: scaffold0306 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||| |||||||| ||||| | | |||||  ||||||||||||||||  ||||||| |||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

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Target: scaffold0152 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  135 actatgaagcacgaatacggactccggacacggcacgggtactgacacgccgacaccgctaataa-ttgagaaaatc 210  Q
    ||||||||||||| |||||||| ||||| | | |||||  ||||||||||||||||  ||||||| |||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 8763 - 8813
Alignment:
Q  151 acggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||| ||||||||| |||||  |||||||||||||||| ||||||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatt 8813  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 241559 - 241609
Alignment:
Q  151 acggactccggacacggcacgggtactgacacgccgacaccgctaataatt 201  Q
    |||||| ||||||||| |||||  |||||||||||||||| ||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatt 241609  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 53170 - 53256
Alignment:
Q  176 ctgacacgccgacaccgctaataatt-gagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 260  Q
    |||||||||||| ||||| ||||||| ||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatg 53256  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  244 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  246 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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