View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16430_low_1 (Length: 744)
Name: NF16430_low_1
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16430_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 418 - 726
Target Start/End: Original strand, 21514030 - 21514341
Alignment:
| Q |
418 |
ggcaatgacatacaggagtataacgaaacttccttctaggtggctcatcagaaacatcctcagcagaagaagagttagcaaccggagtccaacgacggag |
517 |
Q |
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| T |
21514030 |
ggcaataacatacaggagtataacgaaacttccttctaggtggctcatcagaaacatcctcagcagaagaagaattcgcaaccggagtccaacgacgaag |
21514129 |
T |
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| Q |
518 |
aagtaaacgagatttctcgttactattatccttgttgtttttcttgttgttgttaaacgaagaaggtgaaacatgaacccatttcttctcccatttacga |
617 |
Q |
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| T |
21514130 |
aagtaaacgagatttctcgttactattatccttattatttttcttgttgttgttaaacgaagaaggtgaaacatgaacccatttcttctcccatttacga |
21514229 |
T |
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| Q |
618 |
acaggaccattgaacactgcaggtgcaccgtagcgtgaagatgctctacccaacctcgtagaacccactgtctccattg---tgttgtcggtgaaattga |
714 |
Q |
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| T |
21514230 |
acaggaccattgaacactgcaggtgcaccgtagcgtgaagatgctctacccaacctcgtagaacccactgtctccattgtgttgttgtcggtgaaattga |
21514329 |
T |
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| Q |
715 |
atggaacagaac |
726 |
Q |
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| T |
21514330 |
atggaacagaac |
21514341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 21513635 - 21513949
Alignment:
| Q |
9 |
agcacagacacatacatagacacggacaccaggacatgtctaatttgagaaaatgacataaaatttaatgtaatcatgtgtattggtgtcgtgacggaca |
108 |
Q |
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| T |
21513635 |
agcacagacacatacatagacacagacaccaggacatgtctaatttgagaaaatgacataaaatttaatgtaatcatgtgtattggtgtcgtgacggaca |
21513734 |
T |
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| Q |
109 |
atatacatatacaacacgtagacacgcctaatccaagaagta-------------gactacgtgtcagtaccacaaatcccaattcaacctacatgcata |
195 |
Q |
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| T |
21513735 |
ctatacatatacaacacatagacacgcctaatccaagaagtatctgtgctttttagactacgtg------ccacaaatcccaattcaacctacatgcata |
21513828 |
T |
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| Q |
196 |
cattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacataaaaaatcactgtttctcttgaattccacaaacccaacaaaaaatttg |
295 |
Q |
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| T |
21513829 |
cattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacat-aaaaatcattgtttctcttgaattccacaaacccaacaaaaaaattg |
21513927 |
T |
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| Q |
296 |
acgccaacaaacatatcagaag |
317 |
Q |
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| T |
21513928 |
acgccaacaaacacatcagaag |
21513949 |
T |
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