View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_high_17 (Length: 264)
Name: NF16431_high_17
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 26541788 - 26542024
Alignment:
| Q |
18 |
gtgagattattgcatccacaatctacaaaagagcaactcaaacatggtaagcaagacgtctaatgaaaacgaagatgtaagttaaaactttgaagacaga |
117 |
Q |
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| T |
26541788 |
gtgagattattgcatccacaatctacaaaagagcaactcaaacatggtaagcaagacgtctaatgaaaacgaagatgtaagttaaaactttgaagacaga |
26541887 |
T |
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| Q |
118 |
tgatcatagttataccctgcatttatcaatctttgttggtggtaagaatcctggagatgtgaaaatgggtgtcttgggatcataaaatttgaacattgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26541888 |
tgatcatagttataccctgcatttatcaatctttgttggtggtaagaatcctggagatgtgaaaatgggtgtcttgggatcataaaatttgaacattgga |
26541987 |
T |
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| Q |
218 |
ctctgcaagagtatataacaaacaatgttagcttcat |
254 |
Q |
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| T |
26541988 |
ctctgcaagagtatataacaaacaatgttagcttcat |
26542024 |
T |
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Back To:
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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 8391467 - 8391285
Alignment:
| Q |
18 |
gtgagattattgcatccacaatctacaaaagagcaactcaaacatggtaagcaagacgtctaatgaaaacgaagatgtaagttaaaactttgaagacaga |
117 |
Q |
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| T |
8391467 |
gtgagattattgcatccacaatctataagaga--aactcaaacttggtaagcaagatatctaatgaaat-gaaggggtaagattgaacttcgaagataga |
8391371 |
T |
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| Q |
118 |
tgatcatagttataccctgcatttatcaatctttgttggtggtaagaatcctggagatgtgaaaatgggtgtcttgggatcataaa |
203 |
Q |
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| T |
8391370 |
tgatcatagtcatatcctgcatttatcgatctctgttggtggtaagaatcttagacatatgaaaatgggtgtcttgggatcctaaa |
8391285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 54644523 - 54644597
Alignment:
| Q |
130 |
taccctgcatttatcaatctttgttggtggtaagaatcctggagatgtgaaaatgggtgtcttgggatcataaaa |
204 |
Q |
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||||| ||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54644523 |
tacccggcagttgtcaatctttgttggtggtaggaatccaggagatgtgaaaatgggtgtcttgggatcataaaa |
54644597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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