View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_high_18 (Length: 263)
Name: NF16431_high_18
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 13882099 - 13882261
Alignment:
| Q |
69 |
ttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccc |
168 |
Q |
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| T |
13882099 |
ttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttcttccc |
13882198 |
T |
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| Q |
169 |
cttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccacaggtt |
231 |
Q |
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| T |
13882199 |
cttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccccaggtt |
13882261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 16024611 - 16024735
Alignment:
| Q |
99 |
cttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagcatccatgtagttttctc |
198 |
Q |
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| T |
16024611 |
cttccagaaacatcaacgtttccagaagcgttttcactgccctctgatgacctctgaggactttcttccccttcatcatcagcatctgcataattttctc |
16024710 |
T |
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| Q |
199 |
ctctggcttcaccacaaacttcttc |
223 |
Q |
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| T |
16024711 |
ctctggcttcaccacaaacttcttc |
16024735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 14397598 - 14397456
Alignment:
| Q |
82 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagc |
181 |
Q |
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| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaag |
14397499 |
T |
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| Q |
182 |
atccatgtagttttctcctctggcttcaccacaaacttcttcc |
224 |
Q |
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| T |
14397498 |
atccatataattttcttctcctccttcaccacaaacttcttcc |
14397456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 13883924 - 13884011
Alignment:
| Q |
85 |
catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttc |
172 |
Q |
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| T |
13883924 |
catcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctcttccccttc |
13884011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 14391312 - 14391173
Alignment:
| Q |
82 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag |
180 |
Q |
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| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- |
14391216 |
T |
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| Q |
181 |
catccatgtagttttctcctctggcttcaccacaaacttcttcc |
224 |
Q |
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||||| || |||||| ||||||||| |||||||| ||||||| |
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| T |
14391215 |
-ttccatataattttcttctctggctttaccacaaatttcttcc |
14391173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
149 |
cctctgaggactttcttccccttcatcatcagc |
181 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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