View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_high_5 (Length: 472)
Name: NF16431_high_5
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 236 - 461
Target Start/End: Original strand, 161097 - 161322
Alignment:
| Q |
236 |
aaattatagatgagacatgcttcatacacttgtttcttagatacaactcattcatgctttttatccataataatcctagtgacaaattcacaacaggcaa |
335 |
Q |
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| T |
161097 |
aaattatagatgagacatgcttcatacacttgtttcttagatacaactcattcatgctttttatccaaaataatcctagtgacaaattcacaacaggcaa |
161196 |
T |
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| Q |
336 |
cacttgttttcacttcattataattattatacattaataaacaatcatccataccatctttcttcaacatttttatcctataacttttctcaacttatca |
435 |
Q |
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| T |
161197 |
cacttgttttcacttcattataattattatacattaataaacaatcatccataccatctttcttcaacatttttatcctataacttttctcaacttatca |
161296 |
T |
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| Q |
436 |
tattcttaatttctaaattttcattt |
461 |
Q |
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| T |
161297 |
tattcttaatttctaaattttcattt |
161322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 160863 - 161037
Alignment:
| Q |
24 |
tatcggcaccggaaagtaactttattcacttctctacttcttatcaatcattatctattactctatcgcactattcattctctgtcttattttatgttag |
123 |
Q |
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| T |
160863 |
tatcggcaccggaaagtaactatattcacttcactacttcttatcaatcattatctattactctatcacactattcattctctgtcttattttatgttag |
160962 |
T |
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| Q |
124 |
ggttcaattacacaaagttctctctcaaggttttgatgactcttcctggccccttcaaactaaatctggcaggta |
198 |
Q |
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| T |
160963 |
ggttcaattacacaaagttctctctcaaggttttgatgactcttcctggccacttcaaactaaaactggcaggta |
161037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 132589 - 132515
Alignment:
| Q |
124 |
ggttcaattacacaaagttctctctcaaggttttgatgactcttcctggccccttcaaactaaatctggcaggta |
198 |
Q |
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| T |
132589 |
ggttcaattgcacaaggttctctctcaaggttttgatgactctgcatggccacttcaaactaaaaatggcaggta |
132515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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