View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16431_low_1 (Length: 683)

Name: NF16431_low_1
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16431_low_1
NF16431_low_1
[»] chr8 (4 HSPs)
chr8 (1-678)||(38341641-38342299)
chr8 (541-678)||(38333888-38334025)
chr8 (330-359)||(16515088-16515117)
chr8 (386-454)||(45000131-45000198)
[»] chr3 (5 HSPs)
chr3 (386-489)||(37549926-37550029)
chr3 (251-302)||(31148873-31148924)
chr3 (420-463)||(20642070-20642114)
chr3 (242-295)||(44442264-44442321)
chr3 (386-430)||(48507450-48507494)
[»] chr2 (7 HSPs)
chr2 (386-489)||(37422857-37422960)
chr2 (312-393)||(21449705-21449781)
chr2 (282-359)||(41873714-41873792)
chr2 (395-443)||(13728636-13728685)
chr2 (310-347)||(37423155-37423192)
chr2 (392-488)||(41873557-41873654)
chr2 (386-460)||(34957894-34957970)
[»] chr4 (8 HSPs)
chr4 (386-490)||(16502583-16502688)
chr4 (386-489)||(53504679-53504782)
chr4 (396-443)||(38870592-38870639)
chr4 (386-460)||(40020673-40020752)
chr4 (386-482)||(3479153-3479248)
chr4 (327-359)||(38870697-38870729)
chr4 (242-300)||(16502241-16502299)
chr4 (327-357)||(49445045-49445075)
[»] chr1 (6 HSPs)
chr1 (387-482)||(19607208-19607304)
chr1 (381-457)||(11046900-11046978)
chr1 (388-490)||(13818793-13818895)
chr1 (307-359)||(40077026-40077078)
chr1 (324-359)||(50845719-50845754)
chr1 (242-295)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (376-443)||(4167-4234)
[»] chr6 (3 HSPs)
chr6 (242-301)||(779494-779553)
chr6 (282-356)||(10525381-10525454)
chr6 (386-454)||(10525257-10525324)
[»] chr7 (3 HSPs)
chr7 (386-432)||(45249228-45249274)
chr7 (307-354)||(8530377-8530423)
chr7 (386-473)||(44208508-44208595)
[»] chr5 (10 HSPs)
chr5 (386-488)||(29465695-29465797)
chr5 (393-489)||(15047156-15047253)
chr5 (385-430)||(29075674-29075719)
chr5 (234-279)||(37910342-37910387)
chr5 (264-303)||(19176059-19176098)
chr5 (238-296)||(22771161-22771219)
chr5 (386-456)||(31673991-31674063)
chr5 (420-463)||(21524218-21524262)
chr5 (420-463)||(21534778-21534822)
chr5 (307-359)||(37910257-37910309)


Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 38342299 - 38341641
Alignment:
Q  1 gccacaacatcagcatgcattcacgcccaaagcaccaactctagattatagctcagctttgttccagctgctatccgccaaagaaattataattctcagc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342299 gccacaacatcagcacgcattcacgcccaaagcaccaactctagattatagctcagctttgttccagctgctatccgccaaagaaattataattctcagc 38342200  T
Q  101 tgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgatttgtcatctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342199 tgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgatttgtcatctttt 38342100  T
Q  201 tcacgtctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342099 tcacttctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 38342000  T
Q  301 tcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaaaggggaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||                  ||||||||||||||||    
T  38341999 tcagtcagttagttattcggattggttagagagtatgtgtataaataggagaacac-aaaggttag------------------atattgtaaaggggaa 38341919  T
Q  401 acccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcatttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341918 acccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcatttt 38341819  T
Q  501 atttgcaatctttctcagaatgctaacgggagnnnnnnncctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacct 600  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341818 atttgcaatctttctcagaatgctaacgggagaaaaaaacctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacct 38341719  T
Q  601 caaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341718 caaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 38341641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 541 - 678
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
Q  541 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa 640  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || |||   ||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa 38333926  T
Q  641 aaacccatttaacaaggctgttgaggttgatgatgtcc 678  Q
    |||| |||| ||  |||||||| | | |||||||||||    
T  38333925 aaactcattgaatgaggctgttaacggtgatgatgtcc 38333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  330 agagtatgtgtataaataagagaacacaaa 359  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 454  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 485  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  486 acaa 489  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  251 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 302  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
Q  420 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 463  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  242 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 295  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattct 430  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 489
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 485  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  486 acaa 489  Q
    ||||    
T  37422860 acaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  312 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 393  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  282 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 359  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  395 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 443  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  310 tagttattcggattggttagagagtatgtgtataaata 347  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
Q  392 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 488  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
T  41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 460  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 484  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  485 aacaat 490  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 485  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  486 acaa 489  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  396 gggaaacccttggaggagagattatctcccattctttcctatttctta 443  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 460  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 482  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  327 tagagagtatgtgtataaataagagaacacaaa 359  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  242 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 300  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 357
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  327 tagagagtatgtgtataaataagagaacaca 357  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  387 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 482  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 457
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  381 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 457  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 490
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  388 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 487  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  488 aat 490  Q
    |||    
T  13818795 aat 13818793  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  307 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 359  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  324 ggttagagagtatgtgtataaataagagaacacaaa 359  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  242 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 295  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  376 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 443  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  242 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 301  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  282 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 356  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 454  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 432  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  307 agttagttattcggattggttagagagtatgtgtataaataagagaac 354  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 473  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 485  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  486 aca 488  Q
    |||    
T  29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  393 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 489  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  385 atattgtaaaggggaaacccttggaggagagattatctcccattct 430  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  234 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 279  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  264 taattagagtagttaatctagttaagagttgttatagtca 303  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  238 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 296  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  386 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 456  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
Q  420 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 463  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
Q  420 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 463  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  307 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 359  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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