View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_10 (Length: 424)
Name: NF16431_low_10
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 25 - 414
Target Start/End: Complemental strand, 45792159 - 45791768
Alignment:
| Q |
25 |
caaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtataaac |
124 |
Q |
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| T |
45792159 |
caaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtataaac |
45792060 |
T |
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| Q |
125 |
tactgacggtgcaacatgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacgagtggacacaactcatacctcaattttgaa |
224 |
Q |
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| T |
45792059 |
tacttacggtgcgatatgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacatgtggacacaactcatacctcaattttgaa |
45791960 |
T |
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| Q |
225 |
atttcctgcaacaaagaataaactgaattgtgaaaggctagttttcaaaaatacctattgac--aaaagataagtaaaacacagaaggaagaataacatg |
322 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
45791959 |
atttcctgcaacaaaaaataaactgaattgtgaaaggctagttttcaaaaatacctattgacaaaaaaaataagtaaaacacagaaggaagaataacatg |
45791860 |
T |
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| Q |
323 |
tatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45791859 |
tatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttg |
45791768 |
T |
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