View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_13 (Length: 333)
Name: NF16431_low_13
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 40180698 - 40180999
Alignment:
| Q |
21 |
ctaaacaaacctatgagtttattgagcatccgagtgataagaataccggtattatagtggccaatatgcttcagcaagttccacagataaagtatatcct |
120 |
Q |
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| T |
40180698 |
ctaaagaaacctatgagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatcct |
40180797 |
T |
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| Q |
121 |
tcttctttagtgcaacatcgtattcagtgggagcagtggggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattctt |
220 |
Q |
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| T |
40180798 |
tcttctttagtgcaacatcgtattcagtgggagcagtggggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattctt |
40180897 |
T |
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| Q |
221 |
ccaaaccaactctacaaagcggataagattatgaggtggtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttga |
320 |
Q |
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| T |
40180898 |
ccaaaccaattctacaaagtggataagattataaggtggtgtttcaacaaatttagtttgacaagaggttttaataactttgagtaaaaaatgttgttga |
40180997 |
T |
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| Q |
321 |
tg |
322 |
Q |
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|| |
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| T |
40180998 |
tg |
40180999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 38605414 - 38605462
Alignment:
| Q |
274 |
tagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
322 |
Q |
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| T |
38605414 |
tagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
38605462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 40181615 - 40181680
Alignment:
| Q |
261 |
gtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatgatgt |
326 |
Q |
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| T |
40181615 |
gtttcagctaatttagtttgacaagaggtttcaataacactgattagaaagtgttgttgatgatgt |
40181680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 44459420 - 44459246
Alignment:
| Q |
161 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---- |
256 |
Q |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44459321 |
T |
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| Q |
257 |
-----tggtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatgatgt |
326 |
Q |
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| T |
44459320 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgt |
44459246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 44466953 - 44466779
Alignment:
| Q |
161 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---- |
256 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44466854 |
T |
|
| Q |
257 |
-----tggtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatgatgt |
326 |
Q |
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||| | ||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||||| |||||| |
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| T |
44466853 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgt |
44466779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 44460109 - 44460076
Alignment:
| Q |
174 |
acaagggattccagaacaggggtagtgatgagat |
207 |
Q |
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| T |
44460109 |
acaagggattccagaacaggggtagtgatgagat |
44460076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 44467642 - 44467609
Alignment:
| Q |
174 |
acaagggattccagaacaggggtagtgatgagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44467642 |
acaagggattccagaacaggggtagtgatgagat |
44467609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 46358978 - 46358821
Alignment:
| Q |
174 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgttt |
264 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| ||| | || |
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| T |
46358978 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt |
46358879 |
T |
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| Q |
265 |
caacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
322 |
Q |
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||||||||||||||||||||||||||| ||||| ||| ||| ||| ||||||||||| |
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| T |
46358878 |
caacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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