View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16431_low_14 (Length: 324)

Name: NF16431_low_14
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16431_low_14
NF16431_low_14
[»] chr5 (24 HSPs)
chr5 (11-324)||(23265599-23265912)
chr5 (87-241)||(19762660-19762814)
chr5 (92-238)||(9521349-9521495)
chr5 (100-248)||(17470674-17470822)
chr5 (85-237)||(32448559-32448711)
chr5 (79-250)||(26252359-26252529)
chr5 (92-248)||(17170947-17171103)
chr5 (92-211)||(17635870-17635989)
chr5 (135-250)||(25579308-25579423)
chr5 (103-220)||(26066704-26066821)
chr5 (92-228)||(24164437-24164573)
chr5 (108-241)||(26308185-26308319)
chr5 (93-222)||(18226693-18226821)
chr5 (87-169)||(18416795-18416877)
chr5 (99-241)||(15544633-15544771)
chr5 (93-200)||(26314273-26314380)
chr5 (104-246)||(22871218-22871360)
chr5 (93-211)||(19085626-19085740)
chr5 (108-211)||(28253876-28253977)
chr5 (108-204)||(35984859-35984957)
chr5 (127-240)||(17830690-17830804)
chr5 (192-260)||(17337309-17337378)
chr5 (116-175)||(112006-112066)
chr5 (165-260)||(27920899-27920994)
[»] chr7 (29 HSPs)
chr7 (11-324)||(13707949-13708266)
chr7 (87-248)||(5530623-5530784)
chr7 (92-236)||(9500866-9501009)
chr7 (39-241)||(21884490-21884691)
chr7 (92-248)||(31493466-31493622)
chr7 (83-228)||(11218674-11218819)
chr7 (78-241)||(10938168-10938331)
chr7 (92-226)||(18663003-18663137)
chr7 (92-238)||(5222077-5222223)
chr7 (92-248)||(21233017-21233170)
chr7 (107-259)||(9917052-9917204)
chr7 (107-259)||(9924964-9925116)
chr7 (142-240)||(5102038-5102136)
chr7 (94-260)||(15612075-15612241)
chr7 (79-241)||(140674-140831)
chr7 (20-151)||(9721575-9721707)
chr7 (93-260)||(18495906-18496069)
chr7 (99-241)||(21911870-21912016)
chr7 (93-239)||(1882818-1882960)
chr7 (100-248)||(22338811-22338959)
chr7 (93-146)||(1873487-1873539)
chr7 (142-241)||(20175133-20175233)
chr7 (127-211)||(9863751-9863835)
chr7 (115-241)||(4901330-4901462)
chr7 (156-324)||(5797978-5798145)
chr7 (163-206)||(2348385-2348428)
chr7 (161-222)||(5107219-5107280)
chr7 (161-210)||(6006590-6006639)
chr7 (140-219)||(2504795-2504874)
[»] chr4 (22 HSPs)
chr4 (100-324)||(22526742-22526966)
chr4 (93-250)||(11520529-11520686)
chr4 (13-242)||(1832888-1833118)
chr4 (35-240)||(12839129-12839335)
chr4 (86-241)||(18448354-18448507)
chr4 (92-248)||(26115301-26115457)
chr4 (92-250)||(9264408-9264565)
chr4 (20-151)||(13587842-13587974)
chr4 (147-222)||(25120673-25120748)
chr4 (93-228)||(4214958-4215089)
chr4 (100-248)||(10782452-10782598)
chr4 (109-222)||(19901185-19901296)
chr4 (85-220)||(5529013-5529148)
chr4 (83-175)||(25024044-25024136)
chr4 (161-227)||(5956528-5956594)
chr4 (148-222)||(9850886-9850960)
chr4 (27-107)||(23972081-23972162)
chr4 (286-324)||(9053135-9053173)
chr4 (156-218)||(9053243-9053305)
chr4 (192-260)||(7612708-7612777)
chr4 (161-206)||(17672582-17672627)
chr4 (100-165)||(30600961-30601026)
[»] chr3 (17 HSPs)
chr3 (32-324)||(27853869-27854160)
chr3 (100-250)||(820923-821073)
chr3 (100-260)||(6290353-6290513)
chr3 (21-324)||(20885656-20885943)
chr3 (43-217)||(13907613-13907788)
chr3 (87-250)||(21018397-21018552)
chr3 (100-233)||(22245860-22245993)
chr3 (92-248)||(314609-314765)
chr3 (200-324)||(28729216-28729340)
chr3 (161-227)||(21825290-21825356)
chr3 (179-222)||(16221938-16221981)
chr3 (161-222)||(3115877-3115938)
chr3 (215-324)||(7148450-7148559)
chr3 (162-207)||(17156387-17156432)
chr3 (161-206)||(21302516-21302560)
chr3 (179-219)||(8144193-8144233)
chr3 (161-248)||(8446370-8446458)
[»] scaffold0019 (2 HSPs)
scaffold0019 (29-324)||(26957-27259)
scaffold0019 (87-223)||(183875-184011)
[»] chr2 (18 HSPs)
chr2 (35-260)||(26291606-26291832)
chr2 (86-248)||(45621307-45621469)
chr2 (93-260)||(25939668-25939835)
chr2 (115-229)||(25348567-25348681)
chr2 (92-248)||(45553677-45553833)
chr2 (18-211)||(8502453-8502647)
chr2 (35-250)||(27418767-27418983)
chr2 (87-222)||(21072158-21072293)
chr2 (35-250)||(27419913-27420129)
chr2 (79-226)||(16075821-16075968)
chr2 (79-241)||(41789976-41790136)
chr2 (79-207)||(9239774-9239902)
chr2 (28-175)||(26652618-26652762)
chr2 (161-222)||(19199626-19199687)
chr2 (162-207)||(29031772-29031817)
chr2 (161-207)||(23006687-23006733)
chr2 (79-133)||(24533987-24534041)
chr2 (161-206)||(22568196-22568241)
[»] scaffold0672 (1 HSPs)
scaffold0672 (87-248)||(4419-4580)
[»] chr8 (17 HSPs)
chr8 (35-324)||(5855563-5855853)
chr8 (87-238)||(5052317-5052468)
chr8 (35-264)||(15064701-15064930)
chr8 (93-247)||(17977156-17977310)
chr8 (129-260)||(17965543-17965674)
chr8 (87-250)||(24905174-24905337)
chr8 (126-306)||(14075980-14076158)
chr8 (87-155)||(30486848-30486916)
chr8 (114-241)||(24119138-24119266)
chr8 (116-211)||(28847547-28847642)
chr8 (102-164)||(24080200-24080262)
chr8 (163-221)||(24645418-24645476)
chr8 (102-174)||(24381220-24381292)
chr8 (166-227)||(26394166-26394225)
chr8 (161-222)||(6885538-6885599)
chr8 (200-264)||(30121655-30121719)
chr8 (161-205)||(34497723-34497767)
[»] chr1 (15 HSPs)
chr1 (87-249)||(17442770-17442932)
chr1 (92-241)||(16787141-16787289)
chr1 (92-241)||(34481496-34481645)
chr1 (79-248)||(16113449-16113618)
chr1 (31-241)||(7220764-7220978)
chr1 (104-260)||(15299538-15299692)
chr1 (101-241)||(14240183-14240324)
chr1 (35-324)||(26810341-26810631)
chr1 (161-227)||(16360444-16360510)
chr1 (161-222)||(44795949-44796010)
chr1 (87-146)||(17837888-17837947)
chr1 (180-260)||(13134579-13134660)
chr1 (161-209)||(12209168-12209216)
chr1 (148-227)||(17120951-17121030)
chr1 (93-153)||(22620906-22620965)
[»] chr6 (16 HSPs)
chr6 (92-249)||(2587252-2587409)
chr6 (35-236)||(14725971-14726173)
chr6 (35-246)||(9726556-9726763)
chr6 (92-248)||(24216080-24216236)
chr6 (92-264)||(22564363-22564535)
chr6 (35-222)||(9291414-9291601)
chr6 (107-241)||(23087709-23087843)
chr6 (107-241)||(10504173-10504308)
chr6 (108-211)||(32759068-32759171)
chr6 (93-250)||(22565563-22565715)
chr6 (160-227)||(22849956-22850023)
chr6 (165-206)||(11177533-11177574)
chr6 (125-211)||(15613529-15613615)
chr6 (161-206)||(4340336-4340381)
chr6 (161-206)||(14078933-14078978)
chr6 (193-250)||(23645259-23645316)
[»] scaffold0136 (1 HSPs)
scaffold0136 (100-267)||(14896-15063)
[»] scaffold0128 (1 HSPs)
scaffold0128 (148-250)||(44-146)
[»] scaffold0044 (1 HSPs)
scaffold0044 (213-324)||(85889-86000)
[»] scaffold0360 (1 HSPs)
scaffold0360 (100-172)||(17540-17612)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 23265912 - 23265599
Alignment:
Q  11 agagagaagaaccttaagagaaaggtacttagggaggtgaaatacctatattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  23265912 agagagtagaaccttaagagaaaggtacttagggaggtgaaatacctatattgatgcatatctgactgaatcaggaagtagctagttactaattaaggaa 23265813  T
Q  111 acatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23265812 acatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgag 23265713  T
Q  211 atggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23265712 atggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatcc 23265613  T
Q  311 atgtttcaattacc 324  Q
    ||||||||||||||    
T  23265612 atgtttcaattacc 23265599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 19762660 - 19762814
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||| | ||||||||    
T  19762660 agtaactagttagtaattaaggaaacaagtgacttcacgtcttaaatcagcccaataactccattcttcttgcaccttggtaaggtagacgctgataggg 19762759  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
     ||  |||||| ||||||||||||| ||||||||||  |||| ||||||||||||    
T  19762760 ctgtccgtttggagaactaccgagagggagagtgtgcaatgtacttctaagattc 19762814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 9521495 - 9521349
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| ||||||||||||||  |||||| ||||||||||||||   ||||||| ||||||||||||||||| |||| ||||| | |||||||||||      
T  9521495 ctagttagtaattaaggaaacaattgactttacgacttaaatcagtataataactccattctcctttcaccttcgtaaagtagacgatgatagggttgtc 9521396  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaaga 238  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||    
T  9521395 cgtttgtagaactaccgagagggagagtgtgctatgtacttctaaga 9521349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 17470674 - 17470822
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    |||||||||||||| ||||||||| | ||||||| || |||||||||||||||||||  |||||||||||||||||   |||||||| | | ||||||||    
T  17470674 taattaaggaaacaagtgacttcatgtcttaaattagtccaataacttcattctcctcgcaccttggtaaggtagacactgatagggattcccgtttgta 17470773  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    ||||||| |||| ||||||| |||||||| || ||||||||| ||||||    
T  17470774 gaactactgagagggagagtttgttatgtactcctaagattcatagatg 17470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 32448711 - 32448559
Alignment:
Q  85 gaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatag 184  Q
    |||||| ||||||| |||||||| | | | ||||||||| ||| |||| |||  |||||||||||||||| |  ||||||||||||||||||| ||||||    
T  32448711 gaagtaactagttagtaattaagaatataagtgacttcatgacataaaccagttcaataacttcattctcttcgcaccttggtaaggtagatgctgatag 32448612  T
Q  185 ggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaag 237  Q
    |||| |||||||||| ||||| ||||||||| | ||||||||||| |||||||    
T  32448611 ggttactcgtttgtaaaactatcgagatggataatgtgttatgtgtttctaag 32448559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 26252529 - 26252359
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| |||||| ||||||| || |||  |||| |||||||||||||||| |||||| | || |||||||||||||||   |  |||||||||||||||     
T  26252529 aatcaggaagtaactagttagtagttagagaaagatgtgacttcacgactgaaatcaacacagtaacttcattctcctagaaa-ttggtaaggtagatgc 26252431  T
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    |||||||| ||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||| | ||||||    
T  26252430 tgatagggctgcccgtttgcagaactaccgagagggagagtgtgctatgtacttctaagattcattgatgag 26252359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 17170947 - 17171103
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||| | | ||||||| |||||||||||| ||| ||| | |||||||||   |||||||||||||||| | |||||||| |||     
T  17170947 ctagttattaattaaggaaataggcgacttcatgacttaaatcaggccagtaattccattctcctcaaaccttggtaaggtagacgctgatagggctgcc 17171046  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
     ||||||||||||| | ||| |||||||||||||||| || ||||||||| ||||||    
T  17171047 tgtttgtagaactatcaagagggagagtgtgttatgtactgctaagattcatagatg 17171103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 17635989 - 17635870
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||  |||||  ||||||||  ||||||||||||||||||| |||| | | |||     
T  17635989 ctagttaataattaaggaaacaagtgacttcacgacttaaatctgcccggtaactctattctcctcacaccttggtaaggtagatgctgatcgcgctgcc 17635890  T
Q  192 cgtttgtagaactaccgaga 211  Q
    | ||||||||||||||||||    
T  17635889 catttgtagaactaccgaga 17635870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 25579308 - 25579423
Alignment:
Q  135 agcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttct 234  Q
    |||||| ||||||||||||||| |||||||||||||||||| | |||||||| ||||| ||| ||||| |||||||| ||||||| || ||||| |||||    
T  25579308 agcccagtaacttcattctcctctcaccttggtaaggtagacgctgataggggtgctcatttatagaaataccgagagggagagtatgctatgtacttct 25579407  T
Q  235 aagattcgtagatgag 250  Q
    ||||||| | ||||||    
T  25579408 aagattcatggatgag 25579423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 26066821 - 26066704
Alignment:
Q  103 ttaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaa 202  Q
    ||||||||||| || |||||||||||||||||||   | ||||| |||||||||  |||||||||||| |||| | |||||||| ||| |||||||||||    
T  26066821 ttaaggaaacaagttacttcacgacttaaatcagtgtagtaactccattctcctcgcaccttggtaagttagacgctgatagggctgcccgtttgtagaa 26066722  T
Q  203 ctaccgagatggagagtg 220  Q
    ||||||||| ||||||||    
T  26066721 ctaccgagagggagagtg 26066704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 24164437 - 24164573
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||| ||| | ||||||| |   |||||||||||||||| | |||||||| |||     
T  24164437 ctagttattaattaaggaaacaagtgacttcatgacttaaatcagcccagtaattccattctcttcgaaccttggtaaggtagacgctgatagggctgcc 24164536  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgt 228  Q
    | ||||||||| |||  ||| |||||||||| |||||    
T  24164537 catttgtagaagtactaagagggagagtgtgctatgt 24164573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 26308319 - 26308185
Alignment:
Q  108 gaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||  ||||| ||||||||||||||  |  |||||||||||   |||||||||||||    
T  26308319 gaaacaagtgacttcatgacttaaatcagcccaataacttccttcttatttcatccttggtaaggtaggcg-agatagggttgccaatttgtagaactac 26308221  T
Q  207 cgagatggagagtgtgtt-atgtgcttctaagattc 241  Q
    | ||| |||||||||||| |||| ||||||||||||    
T  26308220 caagaaggagagtgtgttgatgtccttctaagattc 26308185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 18226821 - 18226693
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| |||||| |||| || |||||||||| ||||||||||| | |  |||||||||||||    |||||||||||||||||| |||||||| |||||    
T  18226821 tagttagtaattagggaagcaagtgacttcacaacttaaatcagtctagaaacttcattctccgagaaccttggtaaggtagatg-tgatagggatgctc 18226723  T
Q  193 gtttgtagaactaccgagatggagagtgtg 222  Q
    ||||| |||||||||| || ||||||||||    
T  18226722 gtttgaagaactaccgggagggagagtgtg 18226693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 18416877 - 18416795
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaa 169  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||  |||||||||||    
T  18416877 agtaactagttagtaattatggaaacaagtgacttcacgacttaaatcagcccaataactacattcccctcgcaccttggtaa 18416795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 15544771 - 15544633
Alignment:
Q  99 ctaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgt 198  Q
    ||||||| ||||||| |||||||||||||||||||||| | | |||||||||||||||   ||||||||||| ||||   |||||||  ||| |||||||    
T  15544771 ctaattagggaaacaagtgacttcacgacttaaatcagtcaagtaacttcattctcctaaaaccttggtaagatagacactgataggactgcccgtttgt 15544672  T
Q  199 agaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
       |||||||||| |||||||||| ||||| | ||||||||||    
T  15544671 ---actaccgagagggagagtgtgctatgt-cctctaagattc 15544633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 26314380 - 26314273
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| |||||||||||||| |||||||||| ||||||||||| | |  |||| |||||||||  |||||| |||||||||| | |||||||| ||| |    
T  26314380 tagttagtaattaaggaaacaagtgacttcacaacttaaatcagtctagcaactccattctcctcgcaccttagtaaggtagacgctgatagggctgccc 26314281  T
Q  193 gtttgtag 200  Q
    ||||||||    
T  26314280 gtttgtag 26314273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 22871360 - 22871218
Alignment:
Q  104 taaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaac 203  Q
    ||||||||||  |||||||||||||||| |  | |||| || | || |||||  |||||||||||||||||| |  ||||||||||| |||||||| |||    
T  22871360 taaggaaacaattgacttcacgacttaactatgtccaacaaatccactctcccctcaccttggtaaggtagacgcggatagggttgcccgtttgtaaaac 22871261  T
Q  204 taccgagatggagagtgtgttatgtgcttctaagattcgtaga 246  Q
    ||||||||  || |||||| ||| | || ||||||||| ||||    
T  22871260 taccgagagagatagtgtgctatctactcctaagattcataga 22871218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 19085626 - 19085740
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| ||||||||||||| | ||||||||| |||||||||||| || ||||| ||||||  |||||  ||||||||||||||| |||||| | ||| |    
T  19085626 tagttagtaattaaggaaac-tatgacttcacaacttaaatcagcacattaactccattctt-tttca--ttggtaaggtagatgctgatagagctgccc 19085721  T
Q  193 gtttgtagaactaccgaga 211  Q
     ||||||||||||| ||||    
T  19085722 atttgtagaactactgaga 19085740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 28253977 - 28253876
Alignment:
Q  108 gaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactacc 207  Q
    |||||||||||||  | |||||||||||||  | |||||||||||| ||||||||||||||||| |||||  ||||  |  |||||||||||||||||||    
T  28253977 gaaacatgtgactctatgacttaaatcagct-agtaacttcattcttctttcaccttggtaaggaagatg-agatacagccgctcgtttgtagaactacc 28253880  T
Q  208 gaga 211  Q
    ||||    
T  28253879 gaga 28253876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 35984859 - 35984957
Alignment:
Q  108 gaaacatgtgacttcacgacttaaatcagcccaataactt--cattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaact 204  Q
    |||||| ||||||||| | ||||||||||||||| |||||  || ||| |||||||||| ||||| |||| | |||||||||||| ||||||| |||||    
T  35984859 gaaacaagtgacttcatggcttaaatcagcccaacaactttccactcttctttcaccttagtaagatagacgctgatagggttgcccgtttgttgaact 35984957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 17830804 - 17830690
Alignment:
Q  127 cttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg-tt 224  Q
    ||||| |||||| |||||||||||||| |||||| || |||| ||||||| |  |||| |||||| ||||||| |||||||||||| | |||||||| |     
T  17830804 cttaattcagcctaataacttcattcttctttcatccgtggtgaggtagacga-gatatggttgcccgtttgttgaactaccgagaggaagagtgtgcta 17830706  T
Q  225 atgtgcttctaagatt 240  Q
    |||| |||||||||||    
T  17830705 atgtccttctaagatt 17830690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 17337309 - 17337378
Alignment:
Q  192 cgtttgtagaactaccgagatggagagtgtgtt-atgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||||||||||||||| || |||| |||| |||| |||||||||||  |||||||| | |||||||    
T  17337309 cgtttgtagaactaccgagagggggagtatgttgatgtacttctaagattgatagatgagggaaccttta 17337378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 112006 - 112066
Alignment:
Q  116 tgacttcacgacttaaatcagcccaataacttcattctcctttc-accttggtaaggtaga 175  Q
    |||||||| ||||||||| ||||||||||||||| ||| |||||  ||||| |||||||||    
T  112006 tgacttcatgacttaaattagcccaataacttcactcttctttcttccttgataaggtaga 112066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 27920899 - 27920994
Alignment:
Q  165 ggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgtt-atgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||||||||  ||||||| ||| ||||||||||||| | |||| ||||| | || | |||| |||||||||||| |||||||| | |||||||    
T  27920899 ggtaaggtagatga-gatagggctgcccgtttgtagaactgctgagagggagaatatgctgatgtacttctaagattcatagatgagggaaccttta 27920994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 13708266 - 13707949
Alignment:
Q  11 agagagaagaaccttaagagaaaggtacttagggagg--tgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaag 107  Q
    ||||| ||||||| | |||||||||||||||  ||||  ||| ||||||| ||||||||||||| ||   ||| || |||||| ||||||| ||||| ||    
T  13708266 agagataagaaccctgagagaaaggtacttatagaggggtgacatacctaatattgatgtatatatgctagaaccaggaagtaactagttagtaattgag 13708167  T
Q  108 gaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc-gtttgtagaactac 206  Q
    |||| | ||||||||||||||||||| ||| || ||||| || |||  ||||||||||||||||||||   |||||||||| | | ||||||| ||||||    
T  13708166 gaaataagtgacttcacgacttaaataagctcagtaactccactcttgtttcaccttggtaaggtagacactgatagggttaccccgtttgtataactac 13708067  T
Q  207 cgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaa 306  Q
    | ||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||| |||   |||||||| || | |||||||||| ||||| ||||    
T  13708066 caagagggagagtgtgctatgtgcttctaagattcatagatgagcggacctttaagaacattgggactacacttatcgtaatttaggaaagctaacttaa 13707967  T
Q  307 atccatgtttcaattacc 324  Q
     |  ||||||||||||||    
T  13707966 gtttatgtttcaattacc 13707949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 5530784 - 5530623
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||  |||||||    
T  5530784 agtaactagttagtaattaaggaaacaagtggcttcacgacttaaatcagcccaataactccattctccacgcaccttggtaaggtagatgccgataggg 5530685  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
     ||| | |||||||||||||||||| |||||||||||||||| | | |||||||| ||||||    
T  5530684 gtgcccatttgtagaactaccgagagggagagtgtgttatgtacatataagattcatagatg 5530623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 9501009 - 9500866
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| ||||||| |||||| |||||||||||||||||| || |||||||||| |||||||||  ||||||||||||||||| ||||||||||| ||     
T  9501009 ctagttagtaattaatgaaacaagtgacttcacgacttaaaccatcccaataactccattctcctcgcaccttggtaaggtagacgttgatagggtggc- 9500911  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaa 236  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||    
T  9500910 cgtttgtagaactaccgagagggagagtttgttatgtacttctaa 9500866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 21884490 - 21884691
Alignment:
Q  39 ttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagc 137  Q
    |||||||||||| ||||||| ||||| ||||||  || || | ||| |||||| ||| |  ||||||| ||||||| ||||||||||||||||| |||||    
T  21884490 ttagggaggtgacatacctaatattggtgtatacatgtcttactcaggaagtaactaat--ctaattagggaaacaagtgacttcacgacttaattcagc 21884587  T
Q  138 ccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaag 237  Q
    ||| |||||||||||||||   || ||||||||||||| | | |||||||| | ||||||||||||||| |||| |||||||||  ||||| ||||||||    
T  21884588 ccagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaag 21884687  T
Q  238 attc 241  Q
    ||||    
T  21884688 attc 21884691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 31493622 - 31493466
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| |||| |||| |||||||||| || ||  |||| |||||||||   |||||||||||||||| |||||||||| |||     
T  31493622 ctagttattaattaaggaaacaagtgatttcaagacttaaatcggctcagcaactccattctcctcaaaccttggtaaggtagacgttgatagggctgcc 31493523  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
     ||||||||||||||  ||| |||||||||||||||| || ||||||||| ||||||    
T  31493522 tgtttgtagaactactaagagggagagtgtgttatgtactcctaagattcatagatg 31493466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 11218674 - 11218819
Alignment:
Q  83 atgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgat 182  Q
    |||| ||| ||||||| |||||||||||||| | ||||||| |||||||||||||||| | ||| |||||||||  ||||||||||||||| | | ||||    
T  11218674 atgaggtaactagttagtaattaaggaaacaagcgacttcatgacttaaatcagcccagttactccattctcctcgcaccttggtaaggtatacgctgat 11218773  T
Q  183 agggttgctcgtttgtagaactaccgagatggagagtgtgttatgt 228  Q
    |||| | | ||||||||||||||| || | ||||||||||||||||    
T  11218774 agggcttcccgtttgtagaactactgataaggagagtgtgttatgt 11218819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 10938331 - 10938168
Alignment:
Q  78 gaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatg 177  Q
    |||||| |||||| ||||||| |||||||||||||| ||||||||| || ||| |||| | ||||||  ||||| | ||  ||||||||||||||||| |    
T  10938331 gaatcaggaagtaactagttagtaattaaggaaacaagtgacttcatgatttatatcatcacaataatatcatttttctcacaccttggtaaggtagacg 10938232  T
Q  178 ttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
     | |||||||| | ||||||||||||| | || | |||||||||||||||| ||||||||||||    
T  10938231 attatagggttacccgtttgtagaactccagaaagggagagtgtgttatgtacttctaagattc 10938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 18663137 - 18663003
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||| || |||||||||||| ||||||||||| ||||  | ||||||| ||||   |||||||||||||||| | |||||||||||      
T  18663137 ctagttattaattaagaaagcatgtgacttcatgacttaaatcaacccagcatcttcattatcctcaaaccttggtaaggtagacgctgatagggttgtc 18663038  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttat 226  Q
    |||||||||||||||||| | ||||||||||||||    
T  18663037 cgtttgtagaactaccgaaagggagagtgtgttat 18663003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 5222077 - 5222223
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||||| | |||||||||||||||  |||||||||||| ||||||||| ||||  | |     
T  5222077 ctagttagtaattaaggaaacaagtgacttcatgtcttaaatcagccaagtaacttcattctcctcgcaccttggtaagatagatgttggtaggtctacc 5222176  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaaga 238  Q
     |||||||||||||| |||| ||||| |||  ||| |||| ||||||    
T  5222177 tgtttgtagaactactgagagggagactgtactatctgctcctaaga 5222223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 21233170 - 21233017
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| |||| ||| | |||||||||   || ||||||||||||| | |||||||| ||||    
T  21233170 ctagttagtaattaacgaaacaagtgacttcacgacttaaatcaacccagtaattccattctcctcgtactttggtaaggtagacgctgatagggctgct 21233071  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    | |||||| |||||   | | |||||||||| ||||| |||||||||||| ||||||    
T  21233070 catttgtaaaacta---aaagggagagtgtgatatgtacttctaagattcatagatg 21233017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 9917204 - 9917052
Alignment:
Q  107 ggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||||||||||||||| |||||||||| | | |||||||| || ||||   | ||| |||||||||||| |||||||| ||| | ||||||||| |||    
T  9917204 ggaaacatgtgacttcacaacttaaatcaactcgataacttcgttgtcctcgaagcttagtaaggtagatgctgatagggctgcccatttgtagaaatac 9917105  T
Q  207 cgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttt 259  Q
    ||||| |||||||||| ||| | ||||||| |||| |||||||| | ||||||    
T  9917104 cgagagggagagtgtgctatttacttctaaaattcatagatgagggaaccttt 9917052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 9925116 - 9924964
Alignment:
Q  107 ggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||||||||||||||| |||||||||| | | |||||||| || ||||   | ||| |||||||||||| |||||||| ||| | ||||||||| |||    
T  9925116 ggaaacatgtgacttcacaacttaaatcaactcgataacttcgttgtcctcgaagcttagtaaggtagatgctgatagggctgcccatttgtagaaatac 9925017  T
Q  207 cgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttt 259  Q
    ||||| |||||||||| ||| | ||||||| |||| |||||||| | ||||||    
T  9925016 cgagagggagagtgtgctatttacttctaaaattcatagatgagggaaccttt 9924964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 5102038 - 5102136
Alignment:
Q  142 taacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg-ttatgtgcttctaagatt 240  Q
    |||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||| | |||| |||||||||||    
T  5102038 taacttcattcttctttcacctcggtaaggtagatga-gatagggttgctcgtttgtagaactactgagagggagagtgtgctgatgtccttctaagatt 5102136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 15612075 - 15612241
Alignment:
Q  94 agttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcg 193  Q
    ||||| |||||||||||||||||||||| || |||||||||| | |  ||||| |||| | ||||||||||||||| ||||| | |||||||| | | ||    
T  15612075 agttagtaattaaggaaacatgtgactttacaacttaaatcaactcggtaactccatttttctttcaccttggtaaagtagacgctgatagggctacccg 15612174  T
Q  194 tttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||||||| ||||| ||| ||| || |||||  | ||||||||| |||| ||| | |||||||    
T  15612175 tttgtagaactatcgagaaggatagtatgctatgtattgctaagattcatagaggagggaaccttta 15612241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 140831 - 140674
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| || ||| ||||||| |||||||||||||| |  |||||||||||||||||| |||| ||||| |||||||  ||| | ||||||||||||| ||    
T  140831 aatcaagaggtaactagttagtaattaaggaaacacg--acttcacgacttaaatcaacccagtaactccattctc--ttc-cattggtaaggtagacgt 140737  T
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
    ||||||||||   | |||||| ||||||  |||| |||||| |||||||| ||||||||||||    
T  140736 tgatagggttctccctttgtacaactactaagatagagagtatgttatgtacttctaagattc 140674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 9721707 - 9721575
Alignment:
Q  20 aaccttaagagaaaggtacttagggaggtgaaatacctat-attgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtga 118  Q
    |||||| ||||||||||||||| | |||||| |||||||  |||| || ||| ||| | |||||| |||||| ||||||| |||||||| |||||   ||    
T  9721707 aaccttgagagaaaggtacttaagtaggtgacatacctaacattggtgcatacctggcagaatcaagaagtaactagttagtaattaagaaaacagacga 9721608  T
Q  119 cttcacgacttaaatcagcccaataacttcatt 151  Q
    |||||||||||||||||||| ||||||||||||    
T  9721607 cttcacgacttaaatcagcctaataacttcatt 9721575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 18496069 - 18495906
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| |||||||| |||| | |||||||||||||||||| |||||||||||| ||||||| ||   |||||  ||  |||||| |||||||| ||| |    
T  18496069 tagttagtaattaagaaaac-tatgacttcacgacttaaataagcccaataactccattctcttt---ccttgacaaaatagatgctgatagggctgccc 18495974  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    ||||| ||||||||  ||| ||||| ||| ||||||  ||||||||||| |||||||| | |||||||    
T  18495973 gtttgcagaactactaagagggagaatgtcttatgtatttctaagattcatagatgagggaaccttta 18495906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 21911870 - 21912016
Alignment:
Q  99 ctaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgt 198  Q
    ||||||| ||||||| ||||||| ||||||||||||| |||| ||||||||||||| ||  |||||||| ||||||| | || ||||| ||| |||||||    
T  21911870 ctaattagggaaacaagtgactttacgacttaaatcatcccagtaacttcattctcgttgaaccttggttaggtagacgctgttagggctgcccgtttgt 21911969  T
Q  199 agaactacc----gagatggagagtgtgttatgtgcttctaagattc 241  Q
    | |||| ||    ||||  ||||||||| ||||| ||||||||||||    
T  21911970 aaaactcccgagagagagagagagtgtgctatgttcttctaagattc 21912016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 1882960 - 1882818
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||   |||| |||||||| |   ||||| || | | |    
T  1882960 tagttagtaattaaggaaac-tatgacttcacgacttaaatcagcccaataactccattctcttt---cctttgtaaggtatacactgatatggcttccc 1882865  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagat 239  Q
    |||| |||||||||  |||  ||| ||||||||||| ||||||||||    
T  1882864 gtttctagaactactaagagagagtgtgtgttatgtacttctaagat 1882818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 22338811 - 22338959
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    ||||||| |||||| ||||||||| || ||| |||| || | ||||| |||||||||  ||||||||||||||| | | | |||||| | |  |||||||    
T  22338811 taattaatgaaacaagtgacttcatgatttatatcatcctagtaactccattctcctcgcaccttggtaaggtatacgctaatagggctacctgtttgta 22338910  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    |||||||||||| | |||||||| ||||| ||  |||||||| ||||||    
T  22338911 gaactaccgagaggaagagtgtgctatgtactcataagattcatagatg 22338959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 1873539 - 1873487
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataact 146  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||    
T  1873539 tagttagtaattaaggaaac-tatgacttcacgacttaaatcagcccaataact 1873487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 20175233 - 20175133
Alignment:
Q  142 taacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgt-tatgtgcttctaagat 239  Q
    |||||||||||| |||||| ||||||||||||||| |  ||| ||||||  |||||||||||||||||||| ||| |||||||  |||| ||||||||||    
T  20175233 taacttcattcttctttcatccttggtaaggtagacga-gatggggttgtccgtttgtagaactaccgagagggaaagtgtgtgaatgtccttctaagat 20175135  T
Q  240 tc 241  Q
    ||    
T  20175134 tc 20175133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 9863751 - 9863835
Alignment:
Q  127 cttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgaga 211  Q
    ||||||||||| |||||||| |||||||||  |||||| |||||||||| | |||||||| | | | ||||||||||||| ||||    
T  9863751 cttaaatcagcacaataactccattctcctcgcaccttagtaaggtagacgctgatagggctccccatttgtagaactactgaga 9863835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 4901330 - 4901462
Alignment:
Q  115 gtgacttcacgacttaaatcagcccaataacttcattctcc-----tttcac-cttggtaaggtagatgttgatagggttgctcgtttgtagaactaccg 208  Q
    ||||||||  || ||||||||||||||| |||||||||| |     |||||  |||||||||||||| |  ||||||| ||| | |||||||||||||||    
T  4901330 gtgacttcgtgaattaaatcagcccaattacttcattcttcaattctttcaatcttggtaaggtagacga-gatagggatgcccatttgtagaactaccg 4901428  T
Q  209 agatggagagtgtgtt-atgtgcttctaagattc 241  Q
    ||| ||||||| |||| |||| ||||||||||||    
T  4901429 agagggagagtttgttgatgtccttctaagattc 4901462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 324
Target Start/End: Complemental strand, 5798145 - 5797978
Alignment:
Q  156 tttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtac 255  Q
    ||||||||  |||| ||||| | | |||| ||||| |||||||||||  || |||| |||||||||||||||||||||||||| |  || ||   | |||    
T  5798145 tttcacctcagtaaagtagacgctaatagtgttgcccgtttgtagaaa-actgagagggagagtgtgttatgtgcttctaagagttataaatagacatac 5798047  T
Q  256 ctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaattacc 324  Q
    ||||| |||||||   | | |||| || |||||||||||| |  |||||||||| || |||||||||||    
T  5798046 ctttaggaagattgggaattcactcatgggaatttaggaaagtcaatttaaatctatttttcaattacc 5797978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 2348385 - 2348428
Alignment:
Q  163 ttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||| | |||||||||||| |||||||||||||||    
T  2348385 ttggtaaggtagacgctgatagggttgcccgtttgtagaactac 2348428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 5107280 - 5107219
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||||||| | |||||||||||| | |||||| ||||| ||||| || |||||||    
T  5107280 ccttggtaaggtagacgctgatagggttgcccttttgtaaaactatcgagagggggagtgtg 5107219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 6006639 - 6006590
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgag 210  Q
    ||||||||||||||| |||||||| | ||| |||||||||| ||||||||    
T  6006639 ccttggtaaggtagacgttgatagagctgcccgtttgtagatctaccgag 6006590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 2504874 - 2504795
Alignment:
Q  140 aataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagt 219  Q
    |||||||| ||||| |||||| ||||||||||||||| |  |||| |||| | | |||||||||||||||||| |||||||    
T  2504874 aataactttattcttctttcatccttggtaaggtagacga-gatatggtttcccatttgtagaactaccgagagggagagt 2504795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 22526966 - 22526742
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    |||||| |||||||||||| ||||||||||||||||||||  ||||||| |||||||   ||||||||||||||||   |||||| | ||| ||||||||    
T  22526966 taattagggaaacatgtgatttcacgacttaaatcagccccgtaacttccttctcctcgaaccttggtaaggtagacactgatagagctgcccgtttgta 22526867  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgct 299  Q
     ||| || ||    |||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| | ||||||||||| ||||||||||||||||    
T  22526866 aaacaactgattgagagagtgtgttatgtgcttctaagatgcatagattagcgaacctttaagaagattatgactacactaatgggaatttaggaacgct 22526767  T
Q  300 aatttaaatccatgtttcaattacc 324  Q
    ||||||| |  ||||||||||||||    
T  22526766 aatttaagtgtatgtttcaattacc 22526742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 11520529 - 11520686
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| ||||||||||||||  |||||| ||||||| |||||||||| ||||| |||||| ||| ||||||  ||||||||| | ||||||||||| ||    
T  11520529 tagttagtaattaaggaaacaattgacttaacgacttcaatcagcccagtaactccattcttcttgcacctttctaaggtagacgctgatagggttgttc 11520628  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||  ||||||||    
T  11520629 gtttgtagaacttccgagatggtgagtgtgttgtgtgcttctaagatttatagatgag 11520686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 1832888 - 1833118
Alignment:
Q  13 agagaagaaccttaagagaaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaa 111  Q
    |||| |||||| |||||||||||||||||||||||| | ||||||| ||||| || ||| ||    |||||||||| || ||||||| ||||||| ||||    
T  1832888 agagcagaaccctaagagaaaggtacttagggaggttacatacctaatattggtgcatacctacaagaatcatgaattaactagttagtaattaaagaaa 1832987  T
Q  112 catgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgaga 211  Q
    |  |||| |||| || |||||||||||   ||| |||||||||||  ||||||| ||||||||| | |||||||| ||| |||||||| ||||| |||||    
T  1832988 ctggtgaattcatgagttaaatcagccatgtaagttcattctcctcgcaccttgttaaggtagacgctgatagggctgcccgtttgtaaaactagcgaga 1833087  T
Q  212 tggagagtgtgttatgtgcttctaagattcg 242  Q
     |||||||||| ||||| |||| ||||||||    
T  1833088 gggagagtgtgctatgtacttcaaagattcg 1833118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 12839129 - 12839335
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    |||||||||||||||| ||||||| |||||||| | |||||    ||||||| |||| ||||||| |||||||||||||| ||||||| | |  ||||||    
T  12839129 gtacttagggaggtgacatacctaatattgatgaacatctgttgtaatcatgtagtaactagttagtaattaaggaaacaggtgactttatgttttaaat 12839228  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttc 233  Q
       || | ||||| |||| | ||||||| ||||||||||||| | | |||||| ||| |||||||||||||||||||| |||||||||||||||| ||||    
T  12839229 tttcctagtaactccattattctttcacattggtaaggtagacgcttatagggatgcccgtttgtagaactaccgagagggagagtgtgttatgtacttc 12839328  T
Q  234 taagatt 240  Q
    |||||||    
T  12839329 taagatt 12839335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 18448354 - 18448507
Alignment:
Q  86 aagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagg 185  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||  |||||||||||||||| |||||||| |||||||| |||  | ||    
T  18448354 aagtaactagttagtaactaaggaaacatgtgacttcacgacttaaattagcccggtaacttcattctccttgcaccttggaaaggtagacgtt--tggg 18448451  T
Q  186 gttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
    | | | |||||||||||||| ||||| || ||||||| ||||  ||||||||||||    
T  18448452 gcttcccgtttgtagaactatcgagagggggagtgtgctatgcacttctaagattc 18448507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 26115301 - 26115457
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattct-cctttcaccttggtaaggtagatgttgatagggttgc 190  Q
    ||||||| ||||| |||||||| ||||||||| ||||||| |||||||| ||||| |||| | |||  ||||| |||||||||||  ||||||||  | |    
T  26115301 ctagttagtaatttaggaaacaagtgacttcatgacttaa-tcagcccagtaactccatttttcctcgcacctcggtaaggtagactttgataggacttc 26115399  T
Q  191 tcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    |||||| |||||||||||||| |||||||||||||||| || ||||||||| ||||||    
T  26115400 tcgtttatagaactaccgagacggagagtgtgttatgtactcctaagattcctagatg 26115457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 9264408 - 9264565
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| ||||||||||||||  ||||||||| || ||||||||||  |||||| |||||||||   |||| ||| ||||| ||| ||||||||||||     
T  9264408 ctagttagtaattaaggaaacaaatgacttcacaacctaaatcagcctgataactccattctcctcg-acctgggtcaggtaaatgctgatagggttgcc 9264506  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    ||||| |||||||||| ||| ||| | |||| ||||| ||||||||| || ||||||||    
T  9264507 cgtttatagaactaccaagagggaaaatgtgctatgtacttctaagactcatagatgag 9264565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 13587974 - 13587842
Alignment:
Q  20 aaccttaagagaaaggtacttagggaggtgaaatacctat-attgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtga 118  Q
    |||||| ||||||||||||||| | |||||| |||||||  |||| || ||| ||| | |||||| |||||| ||||||| |||||||| |||||   ||    
T  13587974 aaccttgagagaaaggtacttaagtaggtgacatacctaacattggtgcatacctggcagaatcaagaagtaactagttagtaattaagaaaacagacga 13587875  T
Q  119 cttcacgacttaaatcagcccaataacttcatt 151  Q
    |||||||||||||||||||| ||||||||||||    
T  13587874 cttcacgacttaaatcagcctaataacttcatt 13587842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 25120673 - 25120748
Alignment:
Q  147 tcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    |||||||| ||  |||||||||||||||||| |||||||| ||| ||||||||||||||| |||| ||||||||||    
T  25120673 tcattctcattgaaccttggtaaggtagatgctgatagggctgcccgtttgtagaactactgagagggagagtgtg 25120748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 4214958 - 4215089
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| ||||||||||||| |   ||||||||| ||||||||| ||||||||| ||||||| ||   |||| |||||||||| | ||||||| |||| |    
T  4214958 tagttagtaattaaggaaac-tacaacttcacgatttaaatcagtccaataactccattctcttt---ccttagtaaggtagacggtgataggattgcac 4215053  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgt 228  Q
    ||||||||||||||  |||  ||||||||| |||||    
T  4215054 gtttgtagaactactaagagagagagtgtgctatgt 4215089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 10782598 - 10782452
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    |||||||| ||||| ||||||||| ||||||||||||| || ||||| |  ||| ||||||||| | |||| ||||  ||||||  | ||||||||||||    
T  10782598 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcgataagatagacattgataaagctgctcgtttgta 10782499  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    |||||| ||| |  |||||| || ||| ||||||||| |||| ||||||    
T  10782498 gaactatcgaaa--gagagtatgatatatgcttctaatattcatagatg 10782452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 19901296 - 19901185
Alignment:
Q  109 aaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccg 208  Q
    ||||||||||||||| ||||||||||| || | |||||||||||| |||||| |||||||||||||     ||||||| ||| ||| |||||||||||||    
T  19901296 aaacatgtgacttcatgacttaaatcaacc-agtaacttcattcttctttcatcttggtaaggtag-gcaagatagggatgcacgtctgtagaactaccg 19901199  T
Q  209 agatggagagtgtg 222  Q
    ||| ||||| ||||    
T  19901198 agagggagattgtg 19901185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 5529148 - 5529013
Alignment:
Q  85 gaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatag 184  Q
    |||||| |||||||  ||||||| ||||| | ||||||| |||||||||||  ||| ||| | |||||| ||||||||||||||||||| | | | ||||    
T  5529148 gaagtaactagttagcaattaagtaaacaggcgacttcatgacttaaatcaatccagtaattccattcttctttcaccttggtaaggtaaacgctaatag 5529049  T
Q  185 ggttgctcgtttgtagaactaccgagatggagagtg 220  Q
    || | | ||||||| |||||| ||||| ||| ||||    
T  5529048 ggctacccgtttgttgaactagcgagagggatagtg 5529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 25024136 - 25024044
Alignment:
Q  83 atgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtaga 175  Q
    |||| ||| ||||||| |||||||||||||| |||||| || ||||||||||| |||| ||| | |||||||||    |||||||||||||||    
T  25024136 atgatgtaactagttattaattaaggaaacaagtgactgcatgacttaaatcatcccagtaaatccattctcctcgacccttggtaaggtaga 25024044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 5956594 - 5956528
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    ||||||||||||||| | | |||||| ||| | |||||||||||||||||| ||||| |||||||||    
T  5956594 ccttggtaaggtagacgctaatagggctgcccatttgtagaactaccgagagggagaatgtgttatg 5956528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 9850886 - 9850960
Alignment:
Q  148 cattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||   |||||||||||||||   |||||||||||  ||||||||||||||| |||| ||||||||||    
T  9850886 cattctccttgacccttggtaaggtagacactgatagggttgtccgtttgtagaactacagagagggagagtgtg 9850960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 23972162 - 23972081
Alignment:
Q  27 agagaaaggtacttagggaggtgaaatacct-atattgatgtatatctgactgaatcatgaagtagctagttactaattaag 107  Q
    |||||||||||||||||||||||| |||||| |||||| || ||| ||| |  ||||| |||||| ||||||| ||||||||    
T  23972162 agagaaaggtacttagggaggtgacatacctaatattggtgcatacctgccaaaatcaggaagtaactagttagtaattaag 23972081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 9053173 - 9053135
Alignment:
Q  286 aatttaggaacgctaatttaaatccatgtttcaattacc 324  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  9053173 aatttaggaacgctaatttaagtctatgtttcaattacc 9053135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 9053305 - 9053243
Alignment:
Q  156 tttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagag 218  Q
    ||||||| | |||||||||| | |||||||| ||| |||||||||||||||| ||| ||||||    
T  9053305 tttcacccttgtaaggtagacgctgatagggctgcccgtttgtagaactaccaagagggagag 9053243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 7612777 - 7612708
Alignment:
Q  192 cgtttgtagaactaccgagatggagagtgtgtt-atgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||||||||| ||||||||||| | |||| |||| |||||||||||| ||||| || | |||||||    
T  7612777 cgtttgtagaactatcgagatggagaatatgttgatgtacttctaagattcatagataagggaaccttta 7612708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 17672627 - 17672582
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||||| | |||||||| ||| |||||||||||||||    
T  17672627 ccttggtaaggtagacgctgatagggctgcccgtttgtagaactac 17672582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 30601026 - 30600961
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttg 165  Q
    |||||||||||||| ||||||||||||   ||||||| || |||||| |||| ||||| |||||||    
T  30601026 taattaaggaaacaagtgacttcacgatgcaaatcagtccgataactccattttccttgcaccttg 30600961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 27853869 - 27854160
Alignment:
Q  32 aaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgactta 130  Q
    ||||||| ||||||||||  ||||||| |||||||||||||||  | |||||| |||||| ||||||| ||||| |||||||| || |||||||||||||    
T  27853869 aaggtacctagggaggtggcatacctaatattgatgtatatcttccagaatcacgaagtaactagttagtaatttaggaaacaggttacttcacgactta 27853968  T
Q  131 aatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgc 230  Q
    |||||||| | ||||| || ||  ||||||||||| ||||||||| | | |||||| | |||||||||||||||| ||||| ||||||||||||||||||    
T  27853969 aatcagcctagtaactccactcatctttcaccttgataaggtagacgctaatagggcttctcgtttgtagaactatcgaga-ggagagtgtgttatgtgc 27854067  T
Q  231 ttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaattacc 324  Q
    ||||||||||| |  ||| ||| ||||||||||| |||   |||||||| ||   |||||||||| |  ||||||| |  ||||||||||||||    
T  27854068 ttctaagattcatgaatgggcg-acctttaagaacattgagactacactgatcaaaatttaggaaagtcaatttaagtttatgtttcaattacc 27854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 820923 - 821073
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||| ||| || |||||||||| | |||||| | | | ||||||||    
T  820923 taattaaggaaacaagtgacttcacaacttaaatcagcccagtaactccattcttcttgcacattcgtaaggtagacgctgatagagcttcccgtttgta 821022  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    |||||||||||| |||||||||| ||||| |||||||||||| || |||||    
T  821023 gaactaccgagagggagagtgtgctatgtacttctaagattcatatatgag 821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 260
Target Start/End: Complemental strand, 6290513 - 6290353
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    ||||||||||| || ||||||||| ||||||||||||| ||||||||||||||| ||  ||||||||||||||||| | |||||| | ||   |||||||    
T  6290513 taattaaggaaccaagtgacttcatgacttaaatcagcacaataacttcattctactcgcaccttggtaaggtagacgctgatagagatgtctgtttgta 6290414  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||| ||| ||||||| |||||||  |||||||||||| |||||||| | |||||||    
T  6290413 gaactaccaagaaggagagtatgttatgcacttctaagattcatagatgagagaaccttta 6290353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 20885943 - 20885656
Alignment:
Q  21 accttaagagaaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgac 119  Q
    ||||| |||| |||||| |||||||||||| ||||||| |||||||| |||| |  |||||  | |||||| ||||| | |||||||||||||| |||||    
T  20885943 accttgagagtaaggtatttagggaggtgacatacctaatattgatgcatattttcctgaaaaaggaagtaactagtaa-taattaaggaaacaagtgac 20885845  T
Q  120 ttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagt 219  Q
    ||||||||| ||||||||||| ||||| || |||  |||||||| ||||||||||                 |||||||| ||||| | ||| ||||| |    
T  20885844 ttcacgactgaaatcagcccagtaactccactcttttttcacctcggtaaggtag----------------ccgtttgtataactatcaagagggagaat 20885761  T
Q  220 gtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaa 319  Q
    ||| |||||||||||||||||| |||||||||| |||||||||||||||   | || ||| || |||||||||||| || ||||||| || |||||| ||    
T  20885760 gtgctatgtgcttctaagattcatagatgagcggacctttaagaagattgggattagactgatgggaatttaggaaagccaatttaagtctatgtttaaa 20885661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 13907613 - 13907788
Alignment:
Q  43 ggaggtgaaataccta-tattgatgtatatctgactgaatcatga-agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagccca 140  Q
    |||||||| ||||||| |||||||| | ||||| |||||  |||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| || |    
T  13907613 ggaggtgacatacctaatattgatgaaaatctg-ctgaaatatgatagtaactagttagtaattaaggaaacaagtgacttcacgacttaaatcaaccta 13907711  T
Q  141 ataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggaga 217  Q
     ||||| ||||||| |  ||||||||||||  ||||| |||||||| | | | |||||||||||||| |||||||||    
T  13907712 gtaactccattctcttcgcaccttggtaagtaagatgctgatagggcttcccatttgtagaactaccaagatggaga 13907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 21018552 - 21018397
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| |||||||||||| |||  |||||||||||||||||| |||||||||| |||||||  |||||    ||||||||||    |||||||    
T  21018552 agtaactagttagtaattaaggaaaaatg--acttcacgacttaaatcaacccaataactccattctc--ttcac----gtaaggtagacacggataggg 21018461  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    |||| |||||||||||| ||  ||| |||||||||||||||||||| |||||||| ||||||||    
T  21018460 ttgcccgtttgtagaaccacttagaaggagagtgtgttatgtgcttgtaagattcatagatgag 21018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 22245993 - 22245860
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    ||||||||||||||  |||||||||||||||||||||| || ||||| ||||||||| |||||||||| |||||||   |||||||| | | ||||||||    
T  22245993 taattaaggaaacaattgacttcacgacttaaatcagctcagtaactccattctcctctcaccttggtgaggtagacactgatagggctacccgtttgta 22245894  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttc 233  Q
    ||||||| |||| | | |||||| ||||| ||||    
T  22245893 gaactactgagaggaaaagtgtgctatgtacttc 22245860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 314765 - 314609
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| ||||||||| || ||| ||||| |||||| ||  |||||| ||||||||||||||||||||  ||      
T  314765 ctagttagtaattaaggaaacaagtgacttcatgacttaaattagtccagtaactccattcttctcgcaccttcgtaaggtagatgttgataggactgtc 314666  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
     |||||||||| |||||||| ||| |  ||| ||||| ||| |||||||| ||||||    
T  314665 tgtttgtagaattaccgagagggacaacgtgctatgtacttgtaagattcatagatg 314609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 28729340 - 28729216
Alignment:
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgct 299  Q
    |||||| ||||| ||||||||||||||   ||||||||||| ||| || || | |||||||||||||||   || ||||| || ||||||||||||||||    
T  28729340 gaactatcgagagggagagtgtgttatacacttctaagatttgtatataagtgaacctttaagaagattgagaccacactgatgggaatttaggaacgct 28729241  T
Q  300 aatttaaatccatgtttcaattacc 324  Q
    |||| || || ||||||||||||||    
T  28729240 aattcaagtctatgtttcaattacc 28729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 21825290 - 21825356
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||||||||  |||||||||| ||||    
T  21825290 ccttggtaaggtagatgctgatagagttgctcatttgtagaactaccgagtgggagagtgtgctatg 21825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 16221981 - 16221938
Alignment:
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  16221981 tgatagggctgctcgtttgtagaactaccgagatggaaagtgtg 16221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 3115877 - 3115938
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    |||||||||||||||   ||||| || ||| |||||||||||||||||||| ||||||||||    
T  3115877 ccttggtaaggtagacactgataaggctgcccgtttgtagaactaccgagagggagagtgtg 3115938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 7148559 - 7148450
Alignment:
Q  215 agagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgt 314  Q
    |||||||| |||||||||||||||||| || ||||| | ||||||||||| |||   |||||||| || | |||| ||||| ||||| |||| |  || |    
T  7148559 agagtgtgatatgtgcttctaagattcataaatgagtggacctttaagaacattgggactacactgatcgaaattcaggaaagctaacttaagtttatat 7148460  T
Q  315 ttcaattacc 324  Q
    ||||||||||    
T  7148459 ttcaattacc 7148450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 17156432 - 17156387
Alignment:
Q  162 cttggtaaggtagatgttgatagggttgctcgtttgtagaactacc 207  Q
    |||||||||||||| ||||||||||||||   ||||||||||||||    
T  17156432 cttggtaaggtagacgttgatagggttgccaatttgtagaactacc 17156387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 21302560 - 21302516
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||    
T  21302560 ccttggtaaggtagacga-gatagggttgctcgtttgtagaactac 21302516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 8144233 - 8144193
Alignment:
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagt 219  Q
    |||||||| ||| |||||||||||||||||||| |||||||    
T  8144233 tgatagggctgcccgtttgtagaactaccgagagggagagt 8144193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 8446458 - 8446370
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg-tgcttctaagattcgtagatg 248  Q
    |||||| ||||||||   |||||||||||  |||||||| ||||||||| | |||||||||| ||||  ||| ||||||||| ||||||    
T  8446458 ccttggaaaggtagacactgatagggttgtccgtttgtataactaccgatagggagagtgtgctatgaagctcctaagattcatagatg 8446370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 27259 - 26957
Alignment:
Q  29 agaaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgac 127  Q
    |||||||||||||||||||||| ||||||| |||||| | |||| || |  ||||| ||| || ||||||| |||||||||||||  |||||||  |||     
T  27259 agaaaggtacttagggaggtgacatacctaatattgacgcatatatgccaaaatcaggaaataactagttagtaattaaggaaacgggtgactttgcgat 27160  T
Q  128 ttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgtt------gatagggttgctcgtttgtagaactaccgagatggagagtgt 221  Q
    ||||||| | ||||||||| || ||| |||||||||||||||||||||||||      ||||||| | | | |||||| | ||||||||| |||||||||    
T  27159 ttaaatctgtccaataactccactcttctttcaccttggtaaggtagatgttgatactgatagggctacccttttgtaaagctaccgagagggagagtgt 27060  T
Q  222 gttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaatt 321  Q
    |||||| ||||||||||||| |||||||||| ||||||||||| |||   | ||||||||| |||||||| ||| ||||| |||| |  |||||| ||||    
T  27059 gttatgggcttctaagattcctagatgagcggacctttaagaacattgggattacactaatcggaatttatgaaagctaacttaagtttatgttttaatt 26960  T
Q  322 acc 324  Q
    |||    
T  26959 acc 26957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 183875 - 184011
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||  |||||||||||||| ||||||||| |||||||||||||||| ||||| |||| ||||  |||||| |||||  ||| ||||||||||    
T  183875 agtaactagttggtaattaaggaaacaagtgacttcatgacttaaatcagcccagtaactccattttcctcacaccttagtaagaaagacgttgataggg 183974  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgt 223  Q
     |||  |||| |||||||||||||| |||||||||||    
T  183975 ctgcctgtttatagaactaccgagagggagagtgtgt 184011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 26291832 - 26291606
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactga-atcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaa 132  Q
    |||||||||||||||| ||||||| |||||||  | || || |||| |||||| ||||  |||||| |||||||||||||| ||||||||||||||||||    
T  26291832 gtacttagggaggtgacatacctaatattgataaacatttg-ctgacatcatgtagtaattagttagtaattaaggaaacaagtgacttcacgacttaaa 26291734  T
Q  133 tcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgctt 232  Q
    |||||||||||||| |||||||||  ||| ||||||||||||| | | |||||| ||   ||||||| ||||||||||| |||||||||||||||| |||    
T  26291733 tcagcccaataactccattctcctcacactttggtaaggtagacgctcatagggctgtcagtttgtaaaactaccgagaaggagagtgtgttatgtactt 26291634  T
Q  233 ctaagattcgtagatgagcgtaccttta 260  Q
    ||||||||| |||||||| | |||||||    
T  26291633 ctaagattcatagatgagagaaccttta 26291606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 248
Target Start/End: Original strand, 45621307 - 45621469
Alignment:
Q  86 aagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagg 185  Q
    ||||| ||||||| |||||||||||||| || ||||||||||||||||||||| | |||||||||||||||  ||||||||||||||||| |||||||||    
T  45621307 aagtaactagttagtaattaaggaaacaagttacttcacgacttaaatcagcctactaacttcattctcctcgcaccttggtaaggtagacgttgatagg 45621406  T
Q  186 gttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    ||||  |||||||||||||||| ||| | ||| ||| |||||| |||||||| ||| ||||||    
T  45621407 gttgtccgtttgtagaactaccaagaggaagattgtcttatgtacttctaaggttcatagatg 45621469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 25939835 - 25939668
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| |||||||||||||||||||||||| ||||||||| || ||| ||| | |||||||||||||||||||||||||||| | |||||||  | | |    
T  25939835 tagttagtaattaaggaaacatgtgacttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacgctgataggtctcccc 25939736  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    ||||||||||||||||||| |||||||||  ||||| ||| |||||||| |||||||| | |||||||    
T  25939735 gtttgtagaactaccgagagggagagtgttctatgttcttttaagattcatagatgagggaaccttta 25939668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 25348681 - 25348567
Alignment:
Q  115 gtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatgg 214  Q
    |||||||||||||||||||||||||| |||||||||||||||   |||| ||||||||||| | |||||||| ||||||||||||||||||| |||| ||    
T  25348681 gtgacttcacgacttaaatcagcccagtaacttcattctcctcgaacctcggtaaggtagacgctgatagggctgctcgtttgtagaactactgagaggg 25348582  T
Q  215 agagtgtgttatgtg 229  Q
    |||||||||||||||    
T  25348581 agagtgtgttatgtg 25348567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 45553833 - 45553677
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||| || ||||| |||||||||  ||||||||||||||||  | |||||||| |||     
T  45553833 ctagttagtaattaaggaaacaagtgacttcatgacttaaatcagcacagtaactccattctcctcacaccttggtaaggtagtcgctgatagggctgcc 45553734  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    | |||||||||||||| ||| | |||||||||||||  || ||||||||| ||||||    
T  45553733 catttgtagaactaccaagaggaagagtgtgttatgcactcctaagattcatagatg 45553677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 8502453 - 8502647
Alignment:
Q  18 agaaccttaagagaaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgt 116  Q
    |||||| |||||||||| |||||| ||||| || ||||||| ||||| || ||| ||     |||||||||||| ||||||| |||| ||| ||||||||    
T  8502453 agaaccctaagagaaagatacttaaggaggcgacatacctaatattggtgcataccttcaaaaatcatgaagtaactagttagtaatcaagaaaacatgt 8502552  T
Q  117 gacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgaga 211  Q
    |||||||||||||||||||  ||| ||||||||||||||   ||||||| |||||||||  ||||| ||||||  ||||||||||||||||||||    
T  8502553 gacttcacgacttaaatcaatccattaacttcattctccgcacaccttgttaaggtagacattgattgggttgtccgtttgtagaactaccgaga 8502647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 27418983 - 27418767
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaa-tcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaa 132  Q
    |||||||||||||| | ||||||| |||||||| | ||||| ||||| ||| | | || ||||||| |||||||||||||| ||||||| ||||||||||    
T  27418983 gtacttagggaggttacatacctaatattgatgaaaatctg-ctgaaatcaggtaataactagttagtaattaaggaaacaggtgactttacgacttaaa 27418885  T
Q  133 tcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgctt 232  Q
    | ||||||| |||| |||| | |||||||| |||||||||||| |  ||||||| |   |||||||| |||||| |||| | ||| ||||||||||  ||    
T  27418884 tgagcccaaaaactccattattctttcaccctggtaaggtagacgcggatagggataaccgtttgtacaactactgagaggaagaatgtgttatgtattt 27418785  T
Q  233 ctaagattcgtagatgag 250  Q
    ||||||||| ||||||||    
T  27418784 ctaagattcatagatgag 27418767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 21072158 - 21072293
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| ||||| |||||||| ||||||||| |||||||||||||| | ||||| |||||||||   |||| ||||||||||||| ||||||||    
T  21072158 agtaactagttagtaattgaggaaacaagtgacttcatgacttaaatcagcctagtaactccattctcctcatacctcggtaaggtagatgatgataggg 21072257  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
     || ||||| ||||||||||||||| | ||||||||    
T  21072258 ctggtcgttagtagaactaccgagaagcagagtgtg 21072293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 27420129 - 27419913
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaa-tcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaa 132  Q
    |||||||||||||| | ||||||| |||||||| | ||||| ||||| ||| | | || ||||||| |||||||||||||| ||||||| ||||||||||    
T  27420129 gtacttagggaggttacatacctaatattgatgaaaatctg-ctgaaatcaggtaataactagttagtaattaaggaaacaggtgactttacgacttaaa 27420031  T
Q  133 tcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgctt 232  Q
    | ||||||| |||| |||| | |||||||| |||||||||||| |   |||||| |   |||||||| |||||| |||| | ||| ||||||||||  ||    
T  27420030 tgagcccaaaaactccattattctttcaccctggtaaggtagacgcgaatagggataaccgtttgtacaactactgagaggaagaatgtgttatgtattt 27419931  T
Q  233 ctaagattcgtagatgag 250  Q
    ||||||||| ||||||||    
T  27419930 ctaagattcatagatgag 27419913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 16075821 - 16075968
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| || ||| ||||||| |||||||||||||| || |||||||||||||||  |||||| |||||  ||||||||  ||||||||| |||||||       
T  16075821 aatcaggatgtaactagttagtaattaaggaaacaagtaacttcacgacttaaaatagcccagtaactcaattctcctcgcaccttggtgaggtagacac 16075920  T
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttat 226  Q
    |||||||| |    ||||||||||||||||||| ||||||||||||||    
T  16075921 tgatagggatatctgtttgtagaactaccgagagggagagtgtgttat 16075968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 41789976 - 41790136
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||| || |||||||||||||||  |||||||||||  || | ||    
T  41789976 aatcaggaagtaactagttagtaattaatgaaacatgtgacttcatgacttaactcagctcagtaacttcattctcctcgcaccttggtaaaatatacgt 41790075  T
Q  179 -tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
     |||   |  | | |||||||||||||||||||| ||||| |||| ||||| ||||||||||||    
T  41790076 ctga---gactacccgtttgtagaactaccgagagggagaatgtgctatgtacttctaagattc 41790136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 9239902 - 9239774
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| |||||| ||||||| ||||||  |||| |||||||||||||||||||| || || |||||||||||| ||||   | |||||||||||||| |     
T  9239902 aatcaggaagtaactagttagtaattacagaaatatgtgacttcacgacttaaaccaacctaataacttcattttcctcgaatcttggtaaggtagacgc 9239803  T
Q  179 tgatagggttgctcgtttgtagaactacc 207  Q
    | |||||||||| | ||||| ||||||||    
T  9239802 taatagggttgcccatttgttgaactacc 9239774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 26652618 - 26652762
Alignment:
Q  28 gagaaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacga 126  Q
    |||||||||||||| |||||| | ||||||| |||||||| || |||| |  ||| | | |||   ||| || ||||||||||||| |||||||||| ||    
T  26652618 gagaaaggtacttatggaggtaacatacctaatattgatgcatgtctgccaaaattaggtagtgattagctagtaattaaggaaac-tgtgacttcatga 26652716  T
Q  127 cttaaatcagcccaataacttcattctcctttcaccttggtaaggtaga 175  Q
    ||||||||| || | ||||||||||||| ||   |||||||||||||||    
T  26652717 cttaaatcaacctagtaacttcattctcttt---ccttggtaaggtaga 26652762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 19199626 - 19199687
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||||||| | |||||||| ||| | ||||||||||||| |||| ||||||||||    
T  19199626 ccttggtaaggtagacgctgatagggctgcccatttgtagaactactgagaaggagagtgtg 19199687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 29031817 - 29031772
Alignment:
Q  162 cttggtaaggtagatgttgatagggttgctcgtttgtagaactacc 207  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||    
T  29031817 cttggtaaggtagacgttgatagggttgtccgtttgtagaactacc 29031772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 23006687 - 23006733
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactacc 207  Q
    |||||||||||||||   |||||||||||| ||||||||||||||||    
T  23006687 ccttggtaaggtagaaactgatagggttgcccgtttgtagaactacc 23006733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 24534041 - 24533987
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    ||||| |||||| ||||||| |||||||||||| |  ||||||||||||||||||    
T  24534041 aatcacgaagtaactagttagtaattaaggaaaaaaatgacttcacgacttaaat 24533987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 22568241 - 22568196
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||||| | |||||||| ||| |||||||||||||||    
T  22568241 ccttggtaaggtagacgctgatagggctgcccgtttgtagaactac 22568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 4580 - 4419
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||| | ||||||    
T  4580 agtaactagttagtaattaaggaaacaagtgacttcatgacttaaatcagcccaataacttcattctcctcgcaccttgataaggtagatgctaataggg 4481  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
     ||| ||| |||||||||||||||| |||||||||| ||||| |||||||||| | ||||||    
T  4480 ctgcccgtgtgtagaactaccgagagggagagtgtgctatgtacttctaagatgcatagatg 4419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 324
Target Start/End: Complemental strand, 5855853 - 5855563
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    |||| ||| ||||||| ||||||| ||||||| |||||||     ||||| ||| || ||| ||| |||||||||||||| |||||||  ||||||||||    
T  5855853 gtacatagagaggtgacatacctaatattgatttatatctattaaaatcaggaattaactatttagtaattaaggaaacaagtgactttgcgacttaaat 5855754  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttc 233  Q
     |||||| ||||| |  | | ||||||||| |||||||| || | || || |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  5855753 tagcccagtaactccgcttttctttcacctcggtaaggtggacgctggtaaggttgcccgtttgtagaactactgagagggagagtgtgttatgtgcttc 5855654  T
Q  234 taagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaattacc 324  Q
    |||||||| || |||  || ||||||| ||||||    |||||||| || | |||||||||| || |||||||||   |||||||||||||    
T  5855653 taagattcataaatggtcggacctttatgaagatcgggactacactgatggaaatttaggaaagccaatttaaatttctgtttcaattacc 5855563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 5052317 - 5052468
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||  |||||||||||||| ||||||||| ||||||||| | |||| || || |||||||||  ||||||||||||||||||| ||||||||    
T  5052317 agtaactagttggtaattaaggaaacaagtgacttcatgacttaaattaacccagtagctccattctcctcgcaccttggtaaggtagatgctgataggg 5052416  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaaga 238  Q
    ||||  |||||||||||||| |||  |||||||||||||||| |||||||||    
T  5052417 ttgcctgtttgtagaactacagagtgggagagtgtgttatgtacttctaaga 5052468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 264
Target Start/End: Original strand, 15064701 - 15064930
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    ||||| |||||| ||||||| |||| | | ||||| | |||||||||||||| ||    
T  15064701 gtacttagtgaggtgacatacctaatattgatgtatatctgcaaaaatcaagaagtaactagttagtaatga-gaaaacaggcgacttcacgacttagat 15064799  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttc 233  Q
    ||||| |  | || || ||| |||||||| |||||||||||| | ||||| || |||  ||||||||||||||||||| |||||||||| ||||||||||    
T  15064800 cagcctagcatctccactcttctttcaccatggtaaggtagacgctgataaggctgcctgtttgtagaactaccgagagggagagtgtgctatgtgcttc 15064899  T
Q  234 taagattcgtagatgagcgtacctttaagaa 264  Q
    || ||||| |||||| ||  |||||||||||    
T  15064900 tatgattcatagatgggcagacctttaagaa 15064930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 17977310 - 17977156
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| |||||| | ||||| |||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||| ||| | |||||||| | | |    
T  17977310 tagttattaattatgaaaacaagtgacttcacgacttaaatcagcctagtaactccattctccttgcaccttggtaaggcagacgctgatagggcttccc 17977211  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagat 247  Q
    ||||||| ||||||||||| ||| |||||| ||||| |||||||||||| |||||    
T  17977210 gtttgtaaaactaccgagagggatagtgtgctatgtacttctaagattcatagat 17977156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 17965674 - 17965543
Alignment:
Q  129 taaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgt 228  Q
    |||||||| | | |||||||||||||||||||||||||||||||||| | |||||||| ||   |||||||||| |||  ||| ||||||||||||||||    
T  17965674 taaatcagtcaattaacttcattctcctttcaccttggtaaggtagacgctgatagggctgtctgtttgtagaattactaagagggagagtgtgttatgt 17965575  T
Q  229 gcttctaagattcgtagatgagcgtaccttta 260  Q
     |||||||||||| ||||| || |||||||||    
T  17965574 acttctaagattcatagataagggtaccttta 17965543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 24905337 - 24905174
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| ||||| |||||||| |||||||||| |||||||||| |||||||| | |||||||||  |||||||||||||||||   ||||||||    
T  24905337 agtaactagttagtaattgaggaaacaagtgacttcaccacttaaatcaacccaataagtccattctcctcgcaccttggtaaggtagacactgataggg 24905238  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
     |||  |||||||||||||||||||   |||||||  ||||| ||||| |||||| || |||||    
T  24905237 ctgcctgtttgtagaactaccgagagatagagtgttctatgtacttcttagattcatatatgag 24905174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 14076158 - 14075980
Alignment:
Q  126 acttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgtta 225  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||| | |  ||||||| | | ||| | |||||| ||||  |||||||||||||    
T  14076158 acttaaatcagcccaataacttcattctctttgagccttggtaaggtagacgctagtagggtttcccatttatcgaactatcgag--ggagagtgtgtta 14076061  T
Q  226 tgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaa 306  Q
    |||||||| ||||| |||| ||||| | |||||| |||||| |   || |||||| | ||||||||||||| |||||||||    
T  14076060 tgtgcttcgaagatccgtatatgagagaaccttttagaagactaggacaacactagtgggaatttaggaactctaatttaa 14075980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 30486916 - 30486848
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcc 155  Q
    |||| ||| ||| |||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  30486916 agtaactaattagtaattaagaaaacacgtgacttcatgacttaaatcagtccaataacttcattctcc 30486848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 24119138 - 24119266
Alignment:
Q  114 tgtgacttcacgacttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagat 212  Q
    |||| ||||| || ||||||||||| | |||||||  | | |||||| || |||||||||||| |  ||||||||||| ||||||||||||||  ||||     
T  24119138 tgtgccttcatgatttaaatcagcctagtaacttcgattttctttcatccctggtaaggtagacga-gatagggttgcccgtttgtagaactatagagag 24119236  T
Q  213 ggagagtgtgtt-atgtgcttctaagattc 241  Q
    |||||||||||| |||| ||||||||||||    
T  24119237 ggagagtgtgttgatgtccttctaagattc 24119266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 28847642 - 28847547
Alignment:
Q  116 tgacttcacgacttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgaga 211  Q
    |||||||| ||||||||||| ||||||||||||| ||| |||||| |||| ||||||||||||  ||||||| |||  |||||||||| || |||||    
T  28847642 tgacttcatgacttaaatcatcccaataacttcactcttctttcatcctttgtaaggtagatg-agatagggatgccagtttgtagaaatatcgaga 28847547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 24080262 - 24080200
Alignment:
Q  102 attaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcacctt 164  Q
    |||| ||||||| |||||| || ||||||||| ||||||||||||||||||  ||||||||||    
T  24080262 attagggaaacaagtgactccatgacttaaattagcccaataacttcattcctctttcacctt 24080200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 24645476 - 24645418
Alignment:
Q  163 ttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgt 221  Q
    ||||||||||||| |||||||||| ||  |||||||||||||| ||||| |||||||||    
T  24645476 ttggtaaggtagacgttgataggggtgtccgtttgtagaactaacgagagggagagtgt 24645418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 24381220 - 24381292
Alignment:
Q  102 attaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtag 174  Q
    |||||| ||||| ||||||||| |||||||||||||| | ||||| |||||||||  || |||| ||||||||    
T  24381220 attaagtaaacaagtgacttcatgacttaaatcagccaagtaactccattctcctcgcatcttgctaaggtag 24381292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 26394166 - 26394225
Alignment:
Q  166 gtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    ||||||||||   |||||||||||  |||||||||||||||||||||  |||||||||||||    
T  26394166 gtaaggtagacactgatagggttgtccgtttgtagaactaccgagat--agagtgtgttatg 26394225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 6885599 - 6885538
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||||||| | | ||| || ||| ||||||||||||||| |||| ||||||||||    
T  6885599 ccttggtaaggtagacgctaataaggctgcccgtttgtagaactactgagaaggagagtgtg 6885538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 30121655 - 30121719
Alignment:
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaa 264  Q
    |||||||||||| |||||||||||||||| || |||| |||| |||||| |   |||||||||||    
T  30121655 gaactaccgagagggagagtgtgttatgtactcctaaaattcatagatgggaaaacctttaagaa 30121719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 34497767 - 34497723
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaacta 205  Q
    ||||||||||||||| | |||||| |||||| |||||||||||||    
T  34497767 ccttggtaaggtagacgctgatagtgttgcttgtttgtagaacta 34497723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 17442932 - 17442770
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgataggg 186  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||||||| |||||| ||||||  || | |||| |||||||||||||||| | ||||||||    
T  17442932 agtaactagttagtaattaagaaaacaggtgacttcaggacttaaataagcccagtaactttgtttttcttttaccttggtaaggtagacgctgataggg 17442833  T
Q  187 ttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatga 249  Q
    || | |||||||||||||||||||| || ||||||| ||||| |||||||||||| |||||||    
T  17442832 tttcccgtttgtagaactaccgagagggcgagtgtgctatgtacttctaagattcatagatga 17442770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 16787141 - 16787289
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||| | |||||||||||||||| | |||||||| |||     
T  16787141 ctagttattaattaaggaaacaagtgacttcatgacttaaatcagcctaataacttcattcacctataaccttggtaaggtagacgctgatagggctgcc 16787240  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
    |||||||| ||||||||||| ||||| |||| ||||| || |||||||||    
T  16787241 cgtttgtataactaccgaga-ggagaatgtgctatgtactcctaagattc 16787289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 34481645 - 34481496
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||  ||| || |||||||||  |||||||||| | |     
T  34481645 ctagttagtaattaaggaaacaagtgacttcatgacttaaatcaacccaataactgcattctcctcgcacattcgtaaggtaggcgttgatagggctacc 34481546  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 241  Q
     ||||||||||||||||||| |||   |||| ||||| || |||||||||    
T  34481545 tgtttgtagaactaccgagagggatgatgtgctatgtactcctaagattc 34481496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 16113618 - 16113449
Alignment:
Q  79 aatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 178  Q
    ||||| || ||| ||||||| |||||||||||||| ||||||| |||||||||| || |||||||| | |||| | ||  ||||||||||||||||| |     
T  16113618 aatcaggatgtaactagttagtaattaaggaaacaagtgactttacgacttaaagcaacccaataaatccatttttctcacaccttggtaaggtagacgc 16113519  T
Q  179 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
    |||||||||||   ||||||||||||| ||| |  || |||||| || || |||||||||||| ||||||    
T  16113518 tgatagggttgactgtttgtagaactatcgaaagagaaagtgtgctaggtacttctaagattcatagatg 16113449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 7220978 - 7220764
Alignment:
Q  31 aaaggtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagct-----agttactaattaaggaaacatgtgacttcac 124  Q
    ||||| ||||||||||||||  |||||| ||||| || ||||||| || ||||||||||||  |     ||| | |||||  ||||||||||| |||||     
T  7220978 aaaggcacttagggaggtgacgtacctaatattggtgaatatctgtcttaatcatgaagtaattgattcagtaattaatttgggaaacatgtggcttcat 7220879  T
Q  125 gacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgtt 224  Q
    ||||||||| || ||| ||| |||||||| ||||||||||||||||||||| |  |||| | |||| |||||||||||||||||||| |||| |||| |     
T  7220878 gacttaaattagtccattaatttcattcttctttcaccttggtaaggtagacg-agataagcttgcccgtttgtagaactaccgagagggagtgtgt-tg 7220781  T
Q  225 atgtgcttctaagattc 241  Q
    |||| ||||||||||||    
T  7220780 atgtccttctaagattc 7220764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 15299692 - 15299538
Alignment:
Q  104 taaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaac 203  Q
    ||||||||||  |||||||  ||||||||||| |||||  |||||||| | ||  ||||||||||||||||| | |||||||||||   |||||||||||    
T  15299692 taaggaaacaattgacttcgtgacttaaatcatcccaa--acttcattattctcgcaccttggtaaggtagacgatgatagggttgtctgtttgtagaac 15299595  T
Q  204 taccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    |||||||  |||| ||||||| ||| ||||||||| || |||||||| | |||||||    
T  15299594 taccgagtgggagggtgtgttgtgtacttctaagactcatagatgagagaaccttta 15299538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 14240183 - 14240324
Alignment:
Q  101 aattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtag 200  Q
    ||||| ||||| | ||||||| | ||||||||||||| |||| |||||||||| ||| ||||||||||||||||| ||| |||||| |||   ||||||     
T  14240183 aattagggaaataggtgacttgatgacttaaatcagcacaattacttcattcttcttgcaccttggtaaggtagacgttaatagggctgcctttttgtat 14240282  T
Q  201 aactaccgagatggagagtgtg-ttatgtgcttctaagattc 241  Q
    |||||||| || ||||| |||| | |||| ||||||||||||    
T  14240283 aactaccgtgagggagaatgtgctgatgtccttctaagattc 14240324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 324
Target Start/End: Complemental strand, 26810631 - 26810341
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    |||||||  ||||||| ||||||| |||||||||||||||     ||| | ||||||  ||| || |||||||| ||||||||| ||||| |||||||||    
T  26810631 gtacttatagaggtgacatacctaatattgatgtatatctagtaaaattaggaagtaattaggtagtaattaagaaaacatgtgccttcatgacttaaat 26810532  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttc 233  Q
    || || | ||||| |  |||  |||||||  |||||||||||  |||||| |  ||| |||||||||||||||||||| ||| | |||| ||||| |||     
T  26810531 caacctagtaactccgctcttttttcaccacggtaaggtagacattgataagactgcccgtttgtagaactaccgagagggataatgtgctatgtcctta 26810432  T
Q  234 taagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccatgtttcaattacc 324  Q
    ||| ||||  ||||| ||  | ||||| ||||||||  |||||| | || ||| |||| ||| || || |||| || ||||||||||||||    
T  26810431 taacattcaaagatgggcagaactttatgaagatttagactacattgatgggagtttatgaaagccaacttaattctatgtttcaattacc 26810341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 16360510 - 16360444
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||| |||| ||||    
T  16360510 ccttggtaaggtagacgttgatagagctgctcgtttgtagaactaccgagagggagaatgtgctatg 16360444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 44796010 - 44795949
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||| |||| ||||||||||    
T  44796010 ccttggtaaggtagacgttgataggattgcccgtttgtagaactactgagagggagagtgtg 44795949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 17837947 - 17837888
Alignment:
Q  87 agtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataact 146  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||    
T  17837947 agtaactagttagtaattaaggaaacaagtgacttcacgacttaaatcatcccagtaact 17837888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 13134579 - 13134660
Alignment:
Q  180 gatagggttgctcgtttgtagaactaccgagatggagagtgtgtt-atgtgcttctaagattcgtagatgagcgtaccttta 260  Q
    ||||||||||| | |||||||||||||||| | ||||||| |||| |||| | |||||||||| |||||||| | |||||||    
T  13134579 gatagggttgcccatttgtagaactaccgatagggagagtatgttgatgtacatctaagattcatagatgagtgaaccttta 13134660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 12209216 - 12209168
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccga 209  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  12209216 ccttggtaaggtagacgttgatagggctgcccgtttttagaactaccga 12209168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 17120951 - 17121030
Alignment:
Q  148 cattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    |||||||||||  ||||||||||| |||   | |||||| |||||||||||||||||||| ||| |||| ||||| ||||    
T  17120951 cattctcctttacccttggtaaggcagacactaataggggtgctcgtttgtagaactacccagagggagggtgtgctatg 17121030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 22620965 - 22620906
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattct 153  Q
    |||||| |||||||||||| ||  |||||||  ||||||||||||||||||||| ||||||    
T  22620965 tagttagtaattaaggaaa-ataagacttcagaacttaaatcagcccaataactccattct 22620906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 2587409 - 2587252
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||| | |||| ||||||||||  ||||||||||||||||| | |||||||||||      
T  2587409 ctagttagtaattaaggaaacaagtgacttcatgacttaaatcagcctagtaacgtcattctcctcgcaccttggtaaggtagacgctgatagggttgtc 2587310  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatga 249  Q
     ||||| |||||||| |||| |||||||||| ||||| || ||||||||| |||||||    
T  2587309 tgtttggagaactactgagagggagagtgtgctatgtactcctaagattcatagatga 2587252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 14726173 - 14725971
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaa-tcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaa 132  Q
    ||||||||| |||||| ||||||| |||||||| | ||||| ||||| ||| | ||||  |||||| |||||||||||||| ||||||||||||  ||||    
T  14726173 gtacttaggcaggtgacatacctaatattgatgaacatctg-ctgaaatcaggtagtaagtagttagtaattaaggaaacaagtgacttcacgaaataaa 14726075  T
Q  133 tcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgctt 232  Q
    ||| |||| ||||| |||||||||   |||||||||||||| ||||||||| || ||||||||||||||| |||||||| | ||| |||||||||| |||    
T  14726074 tcatcccattaactccattctcctcgaaccttggtaaggtaaatgttgataaggctgctcgtttgtagaattaccgagaggaagaatgtgttatgtactt 14725975  T
Q  233 ctaa 236  Q
    ||||    
T  14725974 ctaa 14725971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 9726763 - 9726556
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    |||||||||||||||| ||| ||| |||||||| |||||| | ||||  ||| |||| |||| || |||||||||||||||||||||||||||||||| |    
T  9726763 gtacttagggaggtgacatatctaatattgatgaatatct-attgaa--atgtagtaactagctagtaattaaggaaacatgtgacttcacgacttaact 9726667  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttc 233  Q
    ||| |||  |||| |||||| |||||||||   ||||||||| | |||||||| ||| |||||||||||||| |||||  |||||||||||||||  |||    
T  9726666 cagaccacgaactccattcttctttcacct--ataaggtagacgctgatagggctgcccgtttgtagaactatcgagaacgagagtgtgttatgtatttc 9726569  T
Q  234 taagattcgtaga 246  Q
    |||||||| ||||    
T  9726568 taagattcataga 9726556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 92 - 248
Target Start/End: Complemental strand, 24216236 - 24216080
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| ||| | ||||| ||||| |||| |||||||||| |||||| ||||| |||| | ||    
T  24216236 ctagttagtaattaaggaaacaagtgacatcacgacttaaatccgcctagtaactccattcaccttgcaccttggtatggtagacgttgacagggcttct 24216137  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatg 248  Q
      |||||||||||||||||| |||||| ||| | ||| |||||||||||| ||||||    
T  24216136 tatttgtagaactaccgagagggagagagtgatgtgtacttctaagattcatagatg 24216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 264
Target Start/End: Original strand, 22564363 - 22564535
Alignment:
Q  92 ctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgct 191  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| ||  || ||||||| |||||||||| ||   | ||| || |||     
T  22564363 ctagttattaattaagcaaacatgtgatttcacgacttaaatcagcacaataactccacccttctttcactttggtaaggtggacaattataaggctgcc 22564462  T
Q  192 cgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaa 264  Q
      |||||| ||||||| ||||||| |||||| | ||||| |||||| ||| |||||||||| |||||||||||    
T  22564463 aatttgtaaaactaccaagatggaaagtgtgctttgtgcgtctaagtttcatagatgagcggacctttaagaa 22564535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 9291414 - 9291601
Alignment:
Q  35 gtacttagggaggtgaaataccta-tattgatgtatatctgactgaatcatgaagtagctagttactaattaaggaaacatgtgacttcacgacttaaat 133  Q
    ||||||| |||||||| ||||||| |||||||  | ||||| |  ||||| | |||| ||||||  |||||||||||||| ||||||||| |||||||||    
T  9291414 gtacttatggaggtgacatacctaatattgataaacatctgccgaaatca-gcagtaactagttggtaattaaggaaacaagtgacttcatgacttaaat 9291512  T
Q  134 cagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtg 222  Q
    ||||||||||||| |||| ||||  |||||| |||||  ||| | |||||||| |||  |||| || ||||||||||| ||||||||||    
T  9291513 cagcccaataactccattttcctcacaccttagtaagaaagacgctgatagggctgcctgtttatataactaccgagagggagagtgtg 9291601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 23087709 - 23087843
Alignment:
Q  107 ggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||||||| | ||||| |||||||||||| || ||| ||||||||||| | | |||||||||||||| | ||||| || | | ||||| || || |||    
T  23087709 ggaaacatgtcatttcacaacttaaatcagctcattaatttcattctcctataatcttggtaaggtagacgctgataaggctacccgtttataaaaatac 23087808  T
Q  207 cgagatggagagtgtgttatgtgcttctaagattc 241  Q
    ||||| ||||||||||||||| |||||||||||||    
T  23087809 cgagagggagagtgtgttatgcgcttctaagattc 23087843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 241
Target Start/End: Complemental strand, 10504308 - 10504173
Alignment:
Q  107 ggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcacc-ttggtaaggtagatgttgatagggttgctcgtttgtagaacta 205  Q
    ||||||| || |||||| |||||||||||| | | ||||||| |||| |||||| | ||||||||||||| |  ||||||||||| | ||||||||||||    
T  10504308 ggaaacaagttacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacga-gatagggttgcccctttgtagaacta 10504210  T
Q  206 ccgagatggagagtgtgtt-atgtgcttctaagattc 241  Q
    |||||| |||||||||||| ||||  |||||||||||    
T  10504209 ccgagagggagagtgtgttgatgtctttctaagattc 10504173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 32759171 - 32759068
Alignment:
Q  108 gaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||| ||||||||| ||||||||||| || |||||||||| | |  ||||| ||||||||||||||| |  |||||||| |||| |||||||||||||    
T  32759171 gaaacaagtgacttcatgacttaaatcatcctaataacttcaattttatttcatccttggtaaggtagacg-agatagggtagctcatttgtagaactac 32759073  T
Q  207 cgaga 211  Q
    |||||    
T  32759072 cgaga 32759068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 22565563 - 22565715
Alignment:
Q  93 tagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctc 192  Q
    |||||| ||||||||||||| | ||||| ||||||||||||||||||| ||||| ||    |  || ||| |||||||||| | | | ||||||||| |     
T  22565563 tagttagtaattaaggaaac-tatgactccacgacttaaatcagcccagtaactcca----ctatttaccatggtaaggtaaacgctaatagggttgata 22565657  T
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    ||||||||||||||  |||  || |||||  ||||| |||||||||||| ||||||||    
T  22565658 gtttgtagaactactaagagagatagtgttctatgtacttctaagattcatagatgag 22565715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 22849956 - 22850023
Alignment:
Q  160 accttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatg 227  Q
    ||||||||||||||||   |||||||  ||| |||||||||||||||||||| |||||||||| ||||    
T  22849956 accttggtaaggtagacactgataggactgcccgtttgtagaactaccgagagggagagtgtgctatg 22850023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 11177574 - 11177533
Alignment:
Q  165 ggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  11177574 ggtaaggtagatgttgatagggctgctcgtttgtataactac 11177533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 15613529 - 15613615
Alignment:
Q  125 gacttaaatcagcccaataacttcattctcctttca-ccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgaga 211  Q
    ||||||||||||| ||| ||||||||||| |||||| ||||||||||| ||| |  ||||||||||  | |||| |||||||||||||    
T  15613529 gacttaaatcagctcaaaaacttcattcttctttcatccttggtaaggaagacg-agatagggttgtccatttgcagaactaccgaga 15613615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 4340381 - 4340336
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||    
T  4340381 ccttggtaaggtagaagctgatagggtttcccgtttgtagaactac 4340336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 14078933 - 14078978
Alignment:
Q  161 ccttggtaaggtagatgttgatagggttgctcgtttgtagaactac 206  Q
    ||||||||||||||||| |||||||| |||| ||||| ||||||||    
T  14078933 ccttggtaaggtagatgctgatagggctgcttgtttggagaactac 14078978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 23645259 - 23645316
Alignment:
Q  193 gtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgag 250  Q
    ||||||||||||||  |||  ||||||||||||||| ||| |||||||| ||||||||    
T  23645259 gtttgtagaactactaagagagagagtgtgttatgtacttataagattcatagatgag 23645316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 14896 - 15063
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgta 199  Q
    ||||||||||||||||||||||||| || ||||||||||   |||||||  ||| ||||||||| ||||||||||||| |||||||| ||   |||||||    
T  14896 taattaaggaaacatgtgacttcacaacctaaatcagccatgtaacttcgctcttctttcacctcggtaaggtagatgctgatagggatgactgtttgta 14995  T
Q  200 gaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagat 267  Q
    |||||| ||||| ||||||||||||||  | ||||||||||| || ||| ||  ||||||| ||||||    
T  14996 gaactatcgagagggagagtgtgttataagtttctaagattcataaatgggcagacctttaggaagat 15063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 44 - 146
Alignment:
Q  148 cattctcctttcaccttggtaaggtagatgttgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagat 247  Q
    |||||||||  |||||||||||||||||   | |||||| | | |||||||||||||||||||| || ||||||| ||||| |||||||||||| |||||    
T  44 cattctcctcacaccttggtaaggtagacactaatagggcttcccgtttgtagaactaccgagagggggagtgtgctatgtacttctaagattcatagat 143  T
Q  248 gag 250  Q
    |||    
T  144 gag 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 85889 - 86000
Alignment:
Q  213 ggagagtgtgttatgtgcttctaagattcgtagatgagcgtacctttaagaagattttaactacactaataggaatttaggaacgctaatttaaatccat 312  Q
    |||||||||||| |||||||||||||||| |||||  ||  ||||||||||| |||   |||||||| || |  ||||||||| || || |||| || ||    
T  85889 ggagagtgtgttgtgtgcttctaagattcatagataggcaaacctttaagaacattgggactacactgatcgagatttaggaatgccaacttaagtctat 85988  T
Q  313 gtttcaattacc 324  Q
    ||||||||||||    
T  85989 gtttcaattacc 86000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 17540 - 17612
Alignment:
Q  100 taattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggt 172  Q
    |||||||||||||| |||||||| |||| ||||| |||||||||||| |  | | ||||||||| ||||||||    
T  17540 taattaaggaaacaagtgacttcgcgacataaattagcccaataactccgcttttctttcacctcggtaaggt 17612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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