View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16431_low_17 (Length: 287)

Name: NF16431_low_17
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16431_low_17
NF16431_low_17
[»] chr5 (19 HSPs)
chr5 (1-269)||(23265110-23265378)
chr5 (29-178)||(29263485-29263633)
chr5 (30-197)||(17185491-17185656)
chr5 (115-215)||(23380246-23380346)
chr5 (127-204)||(17315101-17315178)
chr5 (31-203)||(24852077-24852249)
chr5 (127-203)||(19004227-19004303)
chr5 (127-203)||(23388839-23388915)
chr5 (127-203)||(25550505-25550581)
chr5 (32-149)||(35985382-35985499)
chr5 (219-270)||(17769497-17769548)
chr5 (127-202)||(18208250-18208324)
chr5 (9-79)||(15544195-15544265)
chr5 (127-203)||(20315431-20315507)
chr5 (127-203)||(24266956-24267031)
chr5 (127-203)||(24343587-24343662)
chr5 (127-215)||(34487648-34487735)
chr5 (228-272)||(39434402-39434446)
chr5 (127-203)||(39434484-39434560)
[»] chr4 (24 HSPs)
chr4 (29-215)||(22526374-22526560)
chr4 (33-197)||(12839687-12839851)
chr4 (127-203)||(13692670-13692746)
chr4 (129-215)||(13992879-13992965)
chr4 (127-215)||(11490542-11490630)
chr4 (15-79)||(11700463-11700526)
chr4 (127-203)||(13908876-13908952)
chr4 (127-202)||(19636587-19636662)
chr4 (119-214)||(19882651-19882746)
chr4 (29-203)||(20315022-20315195)
chr4 (101-197)||(23080369-23080467)
chr4 (114-156)||(9052742-9052784)
chr4 (29-101)||(19900703-19900774)
chr4 (1-178)||(13587270-13587445)
chr4 (141-203)||(24639469-24639531)
chr4 (106-167)||(15050063-15050124)
chr4 (106-167)||(15104300-15104361)
chr4 (119-215)||(11521184-11521280)
chr4 (228-268)||(12840662-12840702)
chr4 (127-195)||(16730400-16730468)
chr4 (129-197)||(17216845-17216913)
chr4 (127-215)||(19092305-19092393)
chr4 (127-203)||(19492701-19492777)
chr4 (127-203)||(19562179-19562255)
[»] chr6 (17 HSPs)
chr6 (29-203)||(9726044-9726218)
chr6 (128-203)||(25927305-25927380)
chr6 (29-195)||(28589330-28589499)
chr6 (127-203)||(12183332-12183408)
chr6 (131-203)||(21672440-21672512)
chr6 (29-156)||(24188135-24188262)
chr6 (128-215)||(7542962-7543049)
chr6 (131-202)||(21679856-21679927)
chr6 (15-197)||(28585920-28586101)
chr6 (127-197)||(23143750-23143820)
chr6 (114-203)||(23645755-23645844)
chr6 (127-203)||(22410328-22410404)
chr6 (114-197)||(34478553-34478635)
chr6 (127-197)||(9516813-9516883)
chr6 (127-204)||(22813710-22813787)
chr6 (114-179)||(24252217-24252282)
chr6 (127-203)||(27124493-27124569)
[»] chr7 (34 HSPs)
chr7 (15-203)||(5797533-5797720)
chr7 (29-215)||(21912383-21912569)
chr7 (29-203)||(10937624-10937797)
chr7 (29-194)||(21885059-21885224)
chr7 (114-215)||(18449252-18449353)
chr7 (29-197)||(18466033-18466200)
chr7 (119-215)||(10584479-10584575)
chr7 (15-202)||(18495396-18495576)
chr7 (32-215)||(9864233-9864415)
chr7 (113-197)||(9916594-9916678)
chr7 (113-197)||(9924506-9924590)
chr7 (114-203)||(16306716-16306805)
chr7 (29-149)||(13707560-13707678)
chr7 (127-215)||(17077138-17077226)
chr7 (126-202)||(18467474-18467550)
chr7 (125-196)||(18662470-18662541)
chr7 (63-196)||(22339248-22339381)
chr7 (142-203)||(3329674-3329735)
chr7 (126-215)||(5530031-5530120)
chr7 (220-269)||(16365653-16365702)
chr7 (127-203)||(16297821-16297897)
chr7 (127-203)||(18368981-18369057)
chr7 (127-202)||(11803103-11803178)
chr7 (127-202)||(39273176-39273251)
chr7 (1-178)||(9721003-9721178)
chr7 (220-269)||(1587629-1587678)
chr7 (228-269)||(1848334-1848375)
chr7 (228-269)||(2563766-2563807)
chr7 (127-204)||(4449001-4449078)
chr7 (228-269)||(6042409-6042450)
chr7 (228-269)||(8313503-8313544)
chr7 (127-203)||(3734618-3734694)
chr7 (127-203)||(10587025-10587101)
chr7 (228-272)||(17151859-17151903)
[»] chr8 (10 HSPs)
chr8 (29-195)||(14075624-14075790)
chr8 (32-203)||(5850963-5851132)
chr8 (127-215)||(2637608-2637696)
chr8 (127-203)||(13314993-13315069)
chr8 (129-203)||(17101896-17101970)
chr8 (29-215)||(15238809-15238993)
chr8 (228-269)||(24110765-24110806)
chr8 (127-203)||(29382362-29382438)
chr8 (146-203)||(31288380-31288436)
chr8 (127-203)||(14528171-14528247)
[»] chr2 (20 HSPs)
chr2 (51-204)||(25939179-25939332)
chr2 (119-202)||(27418389-27418472)
chr2 (108-203)||(8503052-8503147)
chr2 (38-197)||(28770355-28770514)
chr2 (106-215)||(9239156-9239265)
chr2 (127-204)||(24090927-24091004)
chr2 (127-203)||(17743477-17743553)
chr2 (127-203)||(20174636-20174712)
chr2 (127-203)||(27909120-27909196)
chr2 (127-204)||(25535295-25535372)
chr2 (151-215)||(25888245-25888309)
chr2 (127-215)||(26603351-26603439)
chr2 (119-215)||(45553140-45553236)
chr2 (125-188)||(5777253-5777316)
chr2 (118-215)||(25070138-25070234)
chr2 (228-269)||(31805010-31805051)
chr2 (127-203)||(25196032-25196108)
chr2 (127-203)||(29719232-29719308)
chr2 (127-215)||(32085473-32085561)
chr2 (127-203)||(45621882-45621958)
[»] chr3 (19 HSPs)
chr3 (29-189)||(7148023-7148183)
chr3 (119-203)||(821507-821591)
chr3 (118-204)||(28728965-28729051)
chr3 (29-197)||(8557033-8557200)
chr3 (127-203)||(21301940-21302016)
chr3 (114-215)||(12759397-12759498)
chr3 (127-203)||(16245730-16245806)
chr3 (127-214)||(20429721-20429808)
chr3 (1-51)||(20885370-20885420)
chr3 (220-269)||(7147936-7147985)
chr3 (220-269)||(12805992-12806041)
chr3 (127-203)||(8319061-8319137)
chr3 (127-203)||(12805891-12805967)
chr3 (127-203)||(17438432-17438508)
chr3 (128-203)||(4650253-4650328)
chr3 (169-215)||(18458467-18458513)
chr3 (220-269)||(932689-932738)
chr3 (127-215)||(3116420-3116507)
chr3 (161-197)||(8765145-8765181)
[»] scaffold0136 (1 HSPs)
scaffold0136 (29-203)||(15369-15542)
[»] scaffold0016 (2 HSPs)
scaffold0016 (115-215)||(12119-12219)
scaffold0016 (127-203)||(3553-3629)
[»] chr1 (21 HSPs)
chr1 (65-215)||(17837527-17837675)
chr1 (101-203)||(24306281-24306382)
chr1 (29-204)||(24267685-24267860)
chr1 (127-215)||(29242529-29242617)
chr1 (29-154)||(6501456-6501580)
chr1 (114-179)||(25958154-25958219)
chr1 (127-203)||(12208623-12208699)
chr1 (127-203)||(17610257-17610333)
chr1 (127-203)||(21449111-21449187)
chr1 (127-203)||(21666609-21666685)
chr1 (127-203)||(25405631-25405707)
chr1 (29-203)||(27117621-27117795)
chr1 (120-197)||(24306950-24307026)
chr1 (127-215)||(13345337-13345425)
chr1 (113-203)||(26540918-26541007)
chr1 (114-215)||(16787714-16787815)
chr1 (114-179)||(17017705-17017770)
chr1 (127-204)||(21334720-21334797)
chr1 (227-272)||(36976360-36976405)
chr1 (119-203)||(34480991-34481075)
chr1 (161-197)||(51473911-51473947)
[»] scaffold0019 (2 HSPs)
scaffold0019 (82-214)||(11251-11383)
scaffold0019 (29-71)||(11377-11419)
[»] scaffold0034 (1 HSPs)
scaffold0034 (230-272)||(76327-76369)
[»] scaffold0155 (1 HSPs)
scaffold0155 (127-202)||(35996-36071)
[»] scaffold0048 (1 HSPs)
scaffold0048 (114-203)||(78616-78705)
[»] scaffold0427 (1 HSPs)
scaffold0427 (220-272)||(2909-2961)
[»] scaffold0650 (1 HSPs)
scaffold0650 (119-202)||(6310-6393)
[»] scaffold0102 (1 HSPs)
scaffold0102 (127-209)||(35553-35635)
[»] scaffold0056 (1 HSPs)
scaffold0056 (220-269)||(24933-24982)
[»] scaffold0638 (1 HSPs)
scaffold0638 (127-203)||(824-900)
[»] scaffold0035 (1 HSPs)
scaffold0035 (127-203)||(69935-70011)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 23265378 - 23265110
Alignment:
Q  1 taaatagagaggattcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23265378 taaatagagaggattcctaacagctgcaaacattctgcaatcaaaataggtcaacattgctttgttgcaaacatattaactttgcaaaactgtaagccct 23265279  T
Q  101 ttatttcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcac 200  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23265278 ttatttcttttatttttattgttcccaaataagtaacgtgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcac 23265179  T
Q  201 ttgaaaaacaatttgtcaaaatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  23265178 ttgaaaaacaatttgtcaaaatctgatcatcaagtttttggcaccgttgttggagattgttgatatttt 23265110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 29263485 - 29263633
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    |||||| | ||||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| || | ||| |||||| ||||||||||||||||    
T  29263485 aacattatacaatcaaaagaggtaaactttgctttgttgcaaacatattaaatt-gcaaaactctaaaccttatatctcttttatttttattgttcccaa 29263583  T
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgat 178  Q
    |||||||||||||||||||||||| ||| || ||||||| | ||||||||    
T  29263584 ataagtaacatgaattgtttggttaaaacgacaatccatgtagatacgat 29263633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 17185656 - 17185491
Alignment:
Q  30 acattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattg-ttcccaa 128  Q
    |||||||||||||||| ||| ||||| ||||| | ||| | ||||||||||||||||||||| ||| | ||| ||  | ||| ||||||||  |||||||    
T  17185656 acattctgcaatcaaa-tagttaaac-ttgctcttttgtatacatattaactttgcaaaactttaaacactt-atcacctttatttttatttattcccaa 17185560  T
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    ||| ||||| |||||||||||||||||| || ||||| | | ||||||||| | |||||||||||||||    
T  17185559 atacgtaacgtgaattgtttggttgaaacgacaatccctgtagatacgatactctacttatcactttat 17185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 23380246 - 23380346
Alignment:
Q  115 tttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaattt 214  Q
    ||||||||||||||||||||| |   | |||| | |||||||||| |||||||||| |||||||| ||||||||||| ||||| |||||  |||||||||    
T  23380246 tttattgttcccaaataagtagcgcaagttgtcttgttgaaatgacaatccatatgaatacgatagtttacttatcagtttattacttggtaaacaattt 23380345  T
Q  215 g 215  Q
    |    
T  23380346 g 23380346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 17315101 - 17315178
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||  |||||||| ||  |||| || ||||||| ||||||||||| ||||||||||||||||| ||||||    
T  17315101 aaataagtaactagaattgttcggaagaaaggacaatccatgtggatacgatactttacttatcactttattacttga 17315178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 24852077 - 24852249
Alignment:
Q  31 cattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt----tattgttccc 126  Q
    |||||| ||| ||||| |||||| | ||||| ||||||||||| ||||||||| ||||||| ||| |||||    |||||| ||||    | |||||| |    
T  24852077 cattctacaaccaaaacaggtaa-ctttgctctgttgcaaacagattaactttccaaaactttaaaccctta---tcttttattttataattttgttctc 24852172  T
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| |||||||||| |  ||||  | ||||||| ||||||||||| | ||||||||| ||||| |||||    
T  24852173 aaataagtaacgtgaattgtttagacgaaacaacaatccatgtggatacgatactatacttatcattttattacttg 24852249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 19004227 - 19004303
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||||||   |||||| ||||||| ||||||||||| |  |||||||||||||| |||||    
T  19004227 aaataagtaacgtgaattgtttggacaaaatgacaatccatgtggatacgatactccacttatcactttattacttg 19004303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 23388839 - 23388915
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||| ||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  23388839 aaataagtaacaagaattgttcggacgaaaggacaatccatgtggatacgatactctacttatcactttattacttg 23388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 25550505 - 25550581
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||  ||||||| ||||| | |||||| |||| | ||||||||||||||| |||||    
T  25550505 aaataagtaacaagaattgtttggacgaaatgacaatccctgtggatatgatactctacttatcactttattacttg 25550581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 35985382 - 35985499
Alignment:
Q  32 attctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttct--tttgtttttattgttcccaaa 129  Q
    ||||||||||||||   ||||||| ||||| ||||  ||||||||||||||||||||| | ||| ||| |||| |||  ||| |||| ||||||||||||    
T  35985382 attctgcaatcaaacg-ggtaaactttgctctgtttaaaacatattaactttgcaaaagtctaaaccc-ttatctcttatttattttaattgttcccaaa 35985479  T
Q  130 taagtaacatgaattgtttg 149  Q
    || ||| |||||||||||||    
T  35985480 tatgtagcatgaattgtttg 35985499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 17769497 - 17769548
Alignment:
Q  219 aaatccgatcatcaagtttttggcgccgttgttggagattgttgatattttt 270  Q
    |||||||| |||||| ||||||| |||||||| |||||||||||||||||||    
T  17769497 aaatccgaccatcaaatttttggtgccgttgtcggagattgttgatattttt 17769548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 18208250 - 18208324
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    ||||||||||||||||||||||||  |||| || ||||||| ||||||||||| | |||||| |||||||| ||||    
T  18208250 aaataagtaacatgaattgtttggacgaaaggacaatccatgtggatacgatactctactta-cactttattactt 18208324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 15544265 - 15544195
Alignment:
Q  9 gaggattcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaa 79  Q
    ||||| ||||||| || || |||||| |||||||||||||||||||  ||||| ||||||||||| |||||    
T  15544265 gaggaatcctaactgccgctaacattttgcaatcaaaataggtaaattttgctatgttgcaaacaaattaa 15544195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 20315431 - 20315507
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||| ||  |||||||||||  |||| || ||||||| ||||||||||| | |||||||||| |||| |||||    
T  20315431 aaataagttacgcgaattgtttggacgaaaggataatccatgtggatacgatactctacttatcacattattacttg 20315507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 24266956 - 24267031
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||   |||||| ||||| | ||||||||||| | |||||| |||||||| |||||    
T  24266956 aaataagtaacacgaattgtttggacaaaatgataatccttgtggatacgatactctactta-cactttattacttg 24267031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 24343587 - 24343662
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||   |||||| ||||| | ||||||||||| | |||||| |||||||| |||||    
T  24343587 aaataagtaacacgaattgtttggacaaaatgataatccttgtggatacgatactctactta-cactttattacttg 24343662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 34487735 - 34487648
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||  ||||||||| |  |||| || ||||||| |||||| |||||| |||||| |||||||| |||||  ||||||||||    
T  34487735 aaataagtaacgcgaattgtttagacgaaacgacaatccatgtggatatgatattctactta-cactttattacttggtaaacaatttg 34487648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 39434446 - 39434402
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttttga 272  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||    
T  39434446 catcaagtttttggcgccgttgccgggtattgttgatatttttga 39434402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 39434560 - 39434484
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||   ||| || ||||||| |||||||||| || ||||||||| ||||| |||||    
T  39434560 aaataagtaacgcgaattgtttggacaaaaggacaatccatgtggatacgattttctacttatcaatttattacttg 39434484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 22526560 - 22526374
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    |||||| ||||||||||| |||||||| ||| ||||||||||||| ||||||| ||||||||| ||| | ||| || |||||| ||||||| ||||||||    
T  22526560 aacattatgcaatcaaaacaggtaaactttgttttgttgcaaacaaattaactctgcaaaactctaaactcttcatctcttttatttttatcgttcccaa 22526461  T
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||   || |||||||||||| || ||| ||| ||||||||||| | ||||||||||||||| | |||| |||| |||||    
T  22526460 ataagtaacacagatggtttggttgaaacgacaattcatgtggatacgatactctacttatcactttattatttgataaacgatttg 22526374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 12839687 - 12839851
Alignment:
Q  33 ttctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttcccaaata 131  Q
    ||||| |||||||| |||||||| ||| | ||||| ||||| ||||||||||||||||| |||  || |||| |||||  |||| | |||||||||||||    
T  12839687 ttctgtaatcaaaagaggtaaactttgttatgttggaaacaaattaactttgcaaaactttaaatcc-ttatctctttaattttattttgttcccaaata 12839785  T
Q  132 agtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    | |||   |||||||| | ||||||||| ||||| | ||||||||||| | ||| ||||| |||||    
T  12839786 attaatgcgaattgttagattgaaatgacaatccttgtggatacgatactctacctatcattttat 12839851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 13692670 - 13692746
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||| |||| || ||||||| |||||| |||| | ||||||||||||||| |||||    
T  13692670 aaataagtaacacgaattgtttggtcgaaacgacaatccatgtggatatgatactctacttatcactttattacttg 13692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 13992879 - 13992965
Alignment:
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||| |||||||||||   ||| |||||||||| ||||||||||| | |||||| |||||||| |||||  ||||||||||    
T  13992879 ataagtaacacgaattgtttggacaaaacgaaaatccatgtggatacgatactctacttaccactttattacttggtaaacaatttg 13992965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 11490630 - 11490542
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||  |||||||||||  ||||  | ||||| | ||||||||||| | ||||||||||||||| |||||| ||||||||||    
T  11490630 aaataagtaacgcgaattgtttggaagaaactacaatccctgtggatacgatactctacttatcactttattacttgataaacaatttg 11490542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 11700463 - 11700526
Alignment:
Q  15 tcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaa 79  Q
    ||||||| || || |||||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  11700463 tcctaaccgccgctaacattctgcaatcaaaataggcaaac-ttgctctgttgcaaacatattaa 11700526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 13908952 - 13908876
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||  |||| || ||||| | ||||||||||| | ||||||||||||||| |||||    
T  13908952 aaataagtaacacgaattgtttggacgaaacgacaatccttgtggatacgatactctacttatcactttattacttg 13908876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 19636587 - 19636662
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||||||||||||||||||||| ||||| || ||||| ||| ||||| ||| | |||||| |||||||| ||||    
T  19636587 aaataagtaacatgaattgtttggatgaaacgacaatccctatagatacaatactctacttaccactttattactt 19636662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 19882746 - 19882651
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaattt 214  Q
    ||||| |||||||||||||  |||||||||||  |||| || ||||||| | ||||||||| | |||| |||||||||| |||||| |||| ||||    
T  19882746 ttgtttccaaataagtaacgcgaattgtttggacgaaacgacaatccatgttgatacgatactctactaatcactttattacttgataaacgattt 19882651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 20315195 - 20315022
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||||||||||||||| |||||| | |||||| |||| |||||||||||  || |||| || ||| | ||| || |||||| | || | |||||| ||    
T  20315195 aacattctgcaatcaaaacaggtaa-ctttgcttcgttgtaaacatattaatgttacaaatctctaaactctt-atatcttttatattattttgttctca 20315098  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||   ||||||||||  |||| || ||||| | |||||| |||||| ||||||||| ||||| |||||    
T  20315097 aataagtaacgcaaattgtttggacgaaacgacaatccttgtggatatgatattctacttatcaatttattacttg 20315022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 23080467 - 23080369
Alignment:
Q  101 ttatttcttttgtttttatt--gttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||| |||||| ||||||||  |||| ||||||||||||   |||||||||||||||| || ||||||| || |||| ||||| |||||||||| ||||    
T  23080467 ttatctcttttatttttattttgttctcaaataagtaacgcaaattgtttggttgaaacgacaatccatgtgaatacaatattctacttatcaccttat 23080369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 9052784 - 9052742
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  9052784 ttttattgttccaaaataagtaacgtgaattgtttggttgaaa 9052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 19900774 - 19900703
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctt 101  Q
    |||||| ||||||||||| |||||||| ||||| ||||||||||| |||||  |||||||||| ||| |||||    
T  19900774 aacattatgcaatcaaaacaggtaaactttgctatgttgcaaacagattaa-attgcaaaactctaaaccctt 19900703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 13587445 - 13587270
Alignment:
Q  1 taaatagagaggattcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagcc-- 98  Q
    ||||||||||||||||||||| || || |||||||| |||| |||| | |||||| ||  | ||||||||||| |  ||  |||||||||| |||  |      
T  13587445 taaatagagaggattcctaaccgccgctaacattcttcaataaaaacaagtaaacttttatctgttgcaaaca-aacaaaattgcaaaactctaacacaa 13587347  T
Q  99 ctttatttcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgat 178  Q
     |||||   |||| ||||||||||| |||||||||| ||  ||||||||||||||||| |  ||| ||| ||||||||||    
T  13587346 atttat---ttttatttttattgtttccaaataagtgacgcgaattgtttggttgaaacggtaattcatgtggatacgat 13587270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 24639469 - 24639531
Alignment:
Q  141 aattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||   ||| |||||||||| ||||||||||| | ||||||||||||||| |||||    
T  24639469 aattgtttggacaaaacgaaaatccatgtggatacgatactctacttatcactttattacttg 24639531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 15050063 - 15050124
Alignment:
Q  106 tcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccat 167  Q
    |||||| |||||||||||||||||||||||||   |||||| | |||| ||||| |||||||    
T  15050063 tcttttatttttattgttcccaaataagtaacgcaaattgtctagttggaatgacaatccat 15050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 15104361 - 15104300
Alignment:
Q  106 tcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccat 167  Q
    |||||| |||||||||||||||||||||||||   |||||| | |||| ||||| |||||||    
T  15104361 tcttttatttttattgttcccaaataagtaacgcaaattgtctagttggaatgacaatccat 15104300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 11521184 - 11521280
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||| ||||||||||  ||||| |||| |  |||| || ||||||| || |||||||| | ||||||||||||||| | |||| |||| |||||    
T  11521184 ttgttcctaaataagtaatgtgaatagtttagaagaaacgacaatccatgtgtatacgatactctacttatcactttattatttgataaacgatttg 11521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 12840702 - 12840662
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatattt 268  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  12840702 catcaaatttttggcgccgttgtcggggattgttgatattt 12840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 16730400 - 16730468
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcacttt 195  Q
    |||||||||||  || ||||||||  |||| |||||||| | ||||||||||| | |||||||||||||    
T  16730400 aaataagtaacgcgagttgtttggacgaaacgaaaatccttttggatacgatactctacttatcacttt 16730468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 17216913 - 17216845
Alignment:
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||||||||  |||||||||||  |||| || ||||||| |||||| |||| | |||||||||||||||    
T  17216913 ataagtaacgagaattgtttggacgaaacgacaatccatgtggatatgatactctacttatcactttat 17216845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 19092393 - 19092305
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||| ||| ||| ||||||||  |||| || ||||||| || || ||||| | | ||||||||||||| |||||| ||||||||||    
T  19092393 aaataagcaacgtgagttgtttggacgaaacgacaatccatgtgaatgcgatactcttcttatcactttattacttgataaacaatttg 19092305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 19492701 - 19492777
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  ||||||||||| ||||| || ||| | | ||||||||||| | |||||||| |||||| |||||    
T  19492701 aaataagtaacgcgaattgtttggatgaaacgacaattcttgtggatacgatactctacttatccctttattacttg 19492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 19562179 - 19562255
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||| |  |||||||||| ||||| || ||| | | |||| |||||| ||||||||||||||||| |||||    
T  19562179 aaataagtaatacaaattgtttggatgaaacgacaatacttgtggacacgatactttacttatcactttattacttg 19562255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 9726218 - 9726044
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||||||||||||||| |||||||| || || | || |||||||||||||||||||||||| ||| ||||| || |||||| |||| | |||||||||    
T  9726218 aacattctgcaatcaaaacaggtaaacttttctcttttccaaacatattaactttgcaaaactttaaaccctt-atctcttttattttattttgttccca 9726120  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||   ||||||||||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  9726119 aataagtaacgcaaattgtttggacgaaacgacaatccatgtggatacgatactctacttatcactttattacttg 9726044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 25927305 - 25927380
Alignment:
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||| ||||||||||||  ||||  ||||||||| ||||||||||||| ||||||||||||||| |||||    
T  25927305 aataagtaacgtgaattgtttggacgaaactaaaatccatgtggatacgatattctacttatcactttattacttg 25927380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 28589330 - 28589499
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    |||||||||||||||||| | |||||| || || ||||||||||||||||  || |||||||| ||| |||||   || | ||  | ||||||||  |||    
T  28589330 aacattctgcaatcaaaacatgtaaactttactctgttgcaaacatattatatt-gcaaaactctaaacccttatcttttatttatcttattgttttcaa 28589428  T
Q  129 ataagtaacat----gaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcacttt 195  Q
    ||||||||  |    ||||| ||||||||||| |||||||||| ||| ||||||| |||||||||||||||    
T  28589429 ataagtaatgtacgcgaattttttggttgaaacgaaaatccatgtggctacgatactttacttatcacttt 28589499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 12183332 - 12183408
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||| ||  ||||||| ||||||| ||||||||||| | ||||||||||||||| |||||    
T  12183332 aaataagtaacgtgaattgttaggacgaaatgacaatccatgtggatacgatactgtacttatcactttattacttg 12183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 21672440 - 21672512
Alignment:
Q  131 aagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||| |||||||||||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  21672440 aagtaacacgaattgtttggacgaaaagataatccatgtggatacgatactctacttatcactttattacttg 21672512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 24188135 - 24188262
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttct-tttgtttttattgttccca 127  Q
    |||||| | ||||||||| || ||||| ||||| ||||||||||| ||||| || |||||||| ||| ||||||||   | ||| |||||||||||||||    
T  24188135 aacatttttcaatcaaaacagataaactttgctctgttgcaaacagattaaatt-gcaaaactataaaccctttatcattatttatttttattgttccca 24188233  T
Q  128 aataagtaacatgaattgtttggttgaaa 156  Q
    ||||| ||||  | ||||||| |||||||    
T  24188234 aataaataacgcggattgtttagttgaaa 24188262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 7542962 - 7543049
Alignment:
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||  ||||||||||| |||||  | | |||| || ||||||||| ||||||||||||||||| |||||  ||||||||||    
T  7542962 aataagtaacgcgaattgtttggatgaaactacagtccacattgatacgatactttacttatcactttattacttggtaaacaatttg 7543049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 21679856 - 21679927
Alignment:
Q  131 aagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||||| |||||||||||  |||| || ||||||| ||||||||||| | ||||||||||||||| ||||    
T  21679856 aagtaacacgaattgtttggacgaaaagataatccatgtggatacgatactctacttatcactttattactt 21679927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 28585920 - 28586101
Alignment:
Q  15 tcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctt-tatttcttttgt 113  Q
    ||||||| || || |||||||| ||||||||| || ||||| || || ||||| ||||||||||| || |||||| | ||| ||||| | |||  ||| |    
T  28585920 tcctaaccgccgctaacattctacaatcaaaacagataaacttttctctgttgtaaacatattaaatt-gcaaaaatctaaacccttatctttaatttat 28586018  T
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    ||| || ||| ||||||||||||| || ||||||| ||||||| || ||||||| | |||| |||| | ||||||||| |||||    
T  28586019 ttt-atagtttccaaataagtaacgtggattgttttgttgaaacgacaatccatgtcgatatgatactctacttatcaatttat 28586101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 23143820 - 23143750
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    ||||||||||||||||||||||||  |||| || ||||| | |||||| |||| | |||||||||||||||    
T  23143820 aaataagtaacatgaattgtttggacgaaacgacaatccctgtggatatgatactctacttatcactttat 23143750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 23645755 - 23645844
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||| ||||   ||||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||| |||||    
T  23645755 ttttattgttcaaaaataattaacgataattgtttggacgaaacgacaatccctatggatacgatactctacttatcactttattacttg 23645844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 22410328 - 22410404
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| |||||||||||  ||||| || ||||| | ||||||||||| | ||||||||| ||||| |||||    
T  22410328 aaataagtaacgtgaattgtttgaatgaaacgacaatccctgtggatacgatactctacttatcattttattacttg 22410404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 34478635 - 34478553
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||||||||| ||||| |||||||||||||||  | |||||||||  ||||| | ||||||||||| | |||||| ||||||||    
T  34478635 ttttattgtttccaaaaaagtaacatgaattgcctagttgaaatgtcaatccttgtggatacgatactctactta-cactttat 34478553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 9516883 - 9516813
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||||||||||  || ||||||||  |||| || ||||||| ||||||||||| | |||||||||||||||    
T  9516883 aaataagtaacgcgagttgtttggacgaaacgacaatccatgtggatacgatactctacttatcactttat 9516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 22813710 - 22813787
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||| |||||||| || ||||| || ||||| ||| ||||| |||  |||||||||||| ||| ||||||    
T  22813710 aaataagtaacaagaattgttcggatgaaaggacaatccctatagatacaatacattacttatcactatattacttga 22813787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 24252217 - 24252282
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgata 179  Q
    |||||||||||  |||||||||||| |||||||||||   ||| || ||||||| |||||||||||    
T  24252217 ttttattgttcaaaaataagtaacaagaattgtttggactaaacgacaatccatgtggatacgata 24252282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 27124493 - 27124569
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||| | |||| || ||||||| | ||||||||| | || |||||||||||| |||||    
T  27124493 aaataagtaacgagaattgtttgctcgaaacgacaatccatgtcgatacgataatataattatcactttattacttg 27124569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 5797720 - 5797533
Alignment:
Q  15 tcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtt 114  Q
    ||||||| ||||| |||||||||||||||||| |||||||| ||||| ||||||||| | |||||||| | |||| | ||| ||||| || |||||| ||    
T  5797720 tcctaaccgctgctaacattctgcaatcaaaacaggtaaactttgctctgttgcaaatagattaactt-gaaaaaatctaaaccctt-atctcttttatt 5797623  T
Q  115 tt-tattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    || | ||||||||||||||||||||  ||||||||||||||  ||| ||| ||| ||||||||||| | ||||||| ||||||| |||||    
T  5797622 ttattttgttcccaaataagtaacacaaattgtttggttgatttgacaattcatgtggatacgatactctacttattactttattacttg 5797533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 21912383 - 21912569
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||||||||||||||| | |||||| ||||| ||||||||| | ||||||||||||||||| ||| ||| |||| || ||| |||| | ||||| |||    
T  21912383 aacattctgcaatcaaaacatgtaaactttgctctgttgcaaatagattaactttgcaaaactctaaaccc-ttatctcatttattttattttgtttcca 21912481  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||| || ||||||| ||||||| || |||||   | ||||||||| |  |||||||||||||| | |||| ||||||||||    
T  21912482 aataagtaacgtggattgttttgttgaaacgacaatccccgtagatacgatactcaacttatcactttattatttgataaacaatttg 21912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 10937797 - 10937624
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    |||||||| ||||||||| || ||||| ||||| || |||||||| ||||| ||  ||||||| ||| |||||   ||  ||| ||||| |||||| |||    
T  10937797 aacattctccaatcaaaacagataaactttgctctgctgcaaacaaattaaatta-caaaactctaaacccttatctttatttatttttgttgttctcaa 10937699  T
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||  ||||||||||| |||||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  10937698 ataagtaatgtgaattgtttgattgaaacgacaatccatgtggatacgatactatacttatcactttattacttg 10937624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 21885059 - 21885224
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    ||||| ||||||||| ||  ||| ||| ||||| |||||||||||  | ||||||| |||||| ||| ||||| || |||||| |||| | ||||||| |    
T  21885059 aacatgctgcaatcagaactggtcaactttgctctgttgcaaacaggtcaactttgaaaaactctaaaccctt-atctcttttattttattttgttccta 21885157  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactt 194  Q
    |||||||||| |||||||||||||||||| || ||||||  || ||| |||||||||||||||||||    
T  21885158 aataagtaacgtgaattgtttggttgaaacgacaatccacgtgaatatgatattttacttatcactt 21885224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 18449353 - 18449252
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatt 213  Q
    ||||||||||||||||||||||||   |||||||||| ||||| || ||||| ||||||||||||||| ||||| ||||||||| |||||  ||||||||    
T  18449353 ttttattgttcccaaataagtaacgccaattgtttggctgaaacgacaatccctatggatacgatattatacttctcactttattacttggtaaacaatt 18449254  T
Q  214 tg 215  Q
    ||    
T  18449253 tg 18449252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 18466200 - 18466033
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    |||||| |||||| ||||||||||||| ||| | ||||||||| | ||||| || |||||||| ||| |||||    | | ||  |||||||||||||||    
T  18466200 aacattttgcaattaaaataggtaaactttgatctgttgcaaataaattaaatt-gcaaaactctaaacccttatcctttatttattttattgttcccaa 18466102  T
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    ||||||||||  |||||||||| ||||| || ||||| |||||||||| || | |||||||||||||||    
T  18466101 ataagtaacacaaattgtttggctgaaacgagaatccctatggatacgttactctacttatcactttat 18466033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 10584479 - 10584575
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||| |||||||||||||| |||||||||   ||||| || ||||||| ||||||||||| ||| ||||||||||||| |||||| |||| |||||    
T  10584479 ttgtttccaaataagtaacacgaattgtttctatgaaacgacaatccatgtggatacgatactttgcttatcactttattacttgataaacgatttg 10584575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 18495576 - 18495396
Alignment:
Q  15 tcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtt 114  Q
    |||||||||| || |||||||||||||||||||| |||||| ||||||||||||||    || ||  ||||||| || ||| ||| |||| |||||| |     
T  18495576 tcctaacagccgctaacattctgcaatcaaaatatgtaaac-ttgctttgttgcaa----ataaaaattgcaaatctctaaaccc-ttatctcttttata 18495483  T
Q  115 tttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    ||| |||||| |||||||||||||  |||||||| |  |||| || |||||  ||||||||  || ||||||||||||||||| ||||    
T  18495482 ttt-ttgttctcaaataagtaacacaaattgtttagacgaaacgacaatccccatggatacattactttacttatcactttattactt 18495396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 9864233 - 9864415
Alignment:
Q  32 attctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttt-tgt-ttttattgttcccaaa 129  Q
    ||||||||||||||| |||||| | ||||||||||||||||| | ||| || |||||||| ||| ||||| || ||||| | | ||||||||||| ||||    
T  9864233 attctgcaatcaaaacaggtaa-ctttgctttgttgcaaacagagtaaatt-gcaaaactctaaaccctt-atctctttatatattttattgttctcaaa 9864329  T
Q  130 taagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||   |||||||| |  |||| || ||||| | |||||| |||| | ||||||||||||||| |||||  ||||||||||    
T  9864330 taagtaacgcaaattgtttagacgaaacgacaatccttgtggatatgatactctacttatcactttattacttggtaaacaatttg 9864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 9916678 - 9916594
Alignment:
Q  113 tttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||| |||||||||||||||||||||   |||||||||||||||  | ||||||| ||||||||||| | ||||||| |||||||    
T  9916678 ttttaattgttcccaaataagtaacacatattgtttggttgaaactacaatccatgtggatacgatactctacttattactttat 9916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 9924590 - 9924506
Alignment:
Q  113 tttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||| |||||||||||||||||||||   |||||||||||||||  | ||||||| ||||||||||| | ||||||| |||||||    
T  9924590 ttttaattgttcccaaataagtaacacatattgtttggttgaaactacaatccatgtggatacgatactctacttattactttat 9924506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 16306805 - 16306716
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||||||||||||||    |||||||| | |||||||| ||||| | | ||||||||| | ||||||||||||||| |||||    
T  16306805 ttttattgttcccaaataagtaatgcaaattgtttagatgaaatgataatccttgtagatacgatactctacttatcactttattacttg 16306716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 13707678 - 13707560
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    ||||||||||||||| | ||||||||| ||| | | |||||||||||||||||||| |||||| |||||| | | ||| | ||  || ||||| ||||||    
T  13707678 aacattctgcaatcaga-taggtaaactttgatatattgcaaacatattaactttgtaaaactctaagccttatcttt-tatttattctattgctcccaa 13707581  T
Q  129 ataagtaacatgaattgtttg 149  Q
    ||||||||||  |||||||||    
T  13707580 ataagtaacacaaattgtttg 13707560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 17077226 - 17077138
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||||||||||||||||  |||| || |||||  |||||||| ||| | ||| ||||||||||| | |||| ||||||||||    
T  17077226 aaataagtaacatgaattgtttggacgaaacgacaatccccatggatacaatactctacctatcactttattatttgataaacaatttg 17077138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 18467550 - 18467474
Alignment:
Q  126 caaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||||||||||| |||||||| |  |||| || ||||||| ||||||| ||| ||||||||||||||||| ||||    
T  18467550 caaataagtaacataaattgtttagacgaaacgacaatccatgtggatacaatactttacttatcactttattactt 18467474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 18662541 - 18662470
Alignment:
Q  125 ccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcacttta 196  Q
    ||||||||||||| ||||||||||||  |||| || ||||| | ||||||||||| | ||||||||||||||    
T  18662541 ccaaataagtaacgtgaattgtttggacgaaacgacaatccttgtggatacgatactctacttatcacttta 18662470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 196
Target Start/End: Original strand, 22339248 - 22339381
Alignment:
Q  63 tgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttcccaaataagtaacatgaattgtttggttgaaatgaaa 161  Q
    |||||||||||||||||||||||||| || ||| ||||  | | ||||| | || | ||||||||||||||||||   |||||||||||  |||| || |    
T  22339248 tgttgcaaacatattaactttgcaaatctctaaaccctcaact-cttttatattattttgttcccaaataagtaaggcgaattgtttggacgaaacgaca 22339346  T
Q  162 atccatatggatacgatattttacttatcacttta 196  Q
    |||| |  |||| ||||| ||||||||||||||||    
T  22339347 atccttgcggatgcgatactttacttatcacttta 22339381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 3329674 - 3329735
Alignment:
Q  142 attgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||| ||||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  3329674 attgtttggatgaaacgacaatccatgtggatacgatactctacttatcactttattacttg 3329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 5530120 - 5530031
Alignment:
Q  126 caaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||||  ||||||||||  |||| |||||||  | ||||||||||  ||||||||||| ||||| |||||  ||||||||||    
T  5530120 caaataagtaacacaaattgtttggacgaaacgaaaatctctgtggatacgatgctttacttatcattttattacttggtaaacaatttg 5530031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 16365702 - 16365653
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    |||||||  ||||||||||| ||||||||| |||||||||||||||||||    
T  16365702 aatccgactatcaagtttttagcgccgttgctggagattgttgatatttt 16365653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 16297821 - 16297897
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||  ||||||||||||  ||||||| ||||||| || |||||||| | |||||||||| |||| |||||    
T  16297821 aaataagtaatgtgaattgtttggacgaaatgacaatccatgtgaatacgataatctacttatcacattattacttg 16297897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 18368981 - 18369057
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  |||| || ||||| ||||||||| ||| | ||||||||||||||| |||||    
T  18368981 aaataagtaactagaattgtttggacgaaacgacaatccctatggatacaatactctacttatcactttattacttg 18369057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 11803178 - 11803103
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||||||||  |||||||||||  |||| || ||||| | ||||||||||| | ||||||||||||||| ||||    
T  11803178 aaataagtaacgcgaattgtttggacgaaaggacaatccctgtggatacgatactctacttatcactttattactt 11803103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 39273176 - 39273251
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    ||||||||||||  |||| |||||  |||| || |||||||||| |||||||| | ||||||||||||||| ||||    
T  39273176 aaataagtaacacaaattatttggacgaaacgacaatccatatgaatacgatactctacttatcactttattactt 39273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 9721178 - 9721003
Alignment:
Q  1 taaatagagaggattcctaacagctgcaaacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagcc-- 98  Q
    ||||||||||||||||||||| || || |||||||| |||| |||| | |||||| ||  | ||||||||||| |  ||  |||||||||| |||  |      
T  9721178 taaatagagaggattcctaaccgccgctaacattcttcaataaaaacaagtaaacttttatctgttgcaaaca-aacaaaattgcaaaactctaacacaa 9721080  T
Q  99 ctttatttcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgat 178  Q
     |||||   |||| ||||||||||| |||||||||| ||  ||||||||||||||||| |  ||| ||| ||||||||||    
T  9721079 atttat---ttttatttttattgtttccaaataagtgacgcgaattgtttggttgaaacggtaattcatgtggatacgat 9721003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 1587678 - 1587629
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||| |||||||||||||| |||||||  ||||||||||||| ||||    
T  1587678 aatccgaccatcaagtttttggtgccgttgccggagattgttgatgtttt 1587629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 1848334 - 1848375
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||||||||| |  |||||||||||||||    
T  1848334 catcaagtttttggcgccgttgtcgaggattgttgatatttt 1848375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 2563807 - 2563766
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  2563807 catcaagtttttggcgccgttgtcggggattattgatatttt 2563766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 4449078 - 4449001
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||| |||||||||||   ||| || | ||| | ||||||| ||| ||||||||||||||||| ||||||    
T  4449078 aaataagtaacaagaattgtttggacaaaaggacagtccctgtggatacaatactttacttatcactttattacttga 4449001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 6042450 - 6042409
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  6042450 catcaagtttttggcgccgttgcccgagattgttgatatttt 6042409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 8313503 - 8313544
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  8313503 catcaaatttttggcgccgttgctggggattgttgatatttt 8313544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 3734694 - 3734618
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||||||   |||  | ||| ||| ||||||||||| | ||||||||||||||| |||||    
T  3734694 aaataagtaacgtgaattgtttggaccaaacaacaattcatgtggatacgatactctacttatcactttattacttg 3734618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 10587025 - 10587101
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||||||| |||||| |  |||| || ||||| | | ||||||||| | ||||||||||||||| |||||    
T  10587025 aaataagtaacatgagttgtttagacgaaacgacaatccctgtagatacgatactctacttatcactttattacttg 10587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 17151859 - 17151903
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttttga 272  Q
    ||||||||||||||||||||||  || | ||||||||||||||||    
T  17151859 catcaagtttttggcgccgttgccgggggttgttgatatttttga 17151903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 14075790 - 14075624
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttctt-ttgtttttattgttccca 127  Q
    |||||||||||||||||| ||| |||| ||||  ||||||||||||||||||||| ||||||| ||| ||| |||| |||| ||  ||||||| |||| |    
T  14075790 aacattctgcaatcaaaacagggaaactttgcactgttgcaaacatattaactttacaaaactctaaaccc-ttatctcttatttattttattattccta 14075692  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcacttt 195  Q
    ||||||||||    ||||||||||||||| || ||||||| ||||||||||| | |||||||||||||    
T  14075691 aataagtaacgcacattgtttggttgaaacgacaatccatgtggatacgatagtctacttatcacttt 14075624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 5851132 - 5850963
Alignment:
Q  32 attctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaaata 131  Q
    |||||||||| |||| |||||||  |||||  |||||||||||||||| || |||||||| | | || || || |||||| ||| | |||||| ||||||    
T  5851132 attctgcaattaaaacaggtaaattttgctccgttgcaaacatattaaatt-gcaaaactcttaaccatt-atctcttttatttattttgttctcaaata 5851035  T
Q  132 agtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||| | ||||||||||||||| || |||| || ||||||||||| | ||||||||||||||| |||||    
T  5851034 agtaacacggattgtttggttgaaacgacaatctatgtggatacgatactctacttatcactttattacttg 5850963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 2637696 - 2637608
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||  || |||||| |  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||| ||||||||||    
T  2637696 aaataagtaacgggagttgtttagacgaaacgacaatccatgtggatacgatactctacttatcactttattacttgataaacaatttg 2637608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 13314993 - 13315069
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  ||||  ||||||||| ||||||||||| | ||||||||||||||| |||||    
T  13314993 aaataagtaacgcgaattgtttggacgaaacaaaaatccatgtggatacgatactatacttatcactttattacttg 13315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 17101896 - 17101970
Alignment:
Q  129 ataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||   ||||||||| ||||| || ||||| ||||||||||||| | ||||||||||||||| |||||    
T  17101896 ataagtaacacatattgtttggatgaaacgacaatccctatggatacgatactctacttatcactttattacttg 17101970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 15238993 - 15238809
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtt--tttattgttccc 126  Q
    |||||||||||||||||  |||||| | ||||| ||||||||||| ||||| || |||||||| ||| ||||| || |||||  ||  ||||||| ||||    
T  15238993 aacattctgcaatcaaac-aggtaa-ctttgctatgttgcaaacagattaaatt-gcaaaactataaaccctt-atctctttatttattttattgatccc 15238898  T
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
     ||||||||||  ||||||||| |  |||| || ||| ||| ||||||||||| | ||||||||| ||| | |||||  ||||||||||    
T  15238897 taataagtaacgcgaattgtttagacgaaacgacaattcatgtggatacgataatctacttatcattttcttacttggtaaacaatttg 15238809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 24110765 - 24110806
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  24110765 catcaagtttttggcgccgttgtcggggattgttgatatttt 24110806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 29382362 - 29382438
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||   |||||||||| ||||| || ||||| | ||||||||||| | ||||||||||||||| |||||    
T  29382362 aaataagtaacgcaaattgtttggatgaaacgacaatccctgtggatacgatactctacttatcactttattacttg 29382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 31288436 - 31288380
Alignment:
Q  146 tttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| || ||||| ||||||||||||| |||||||| |||||||| |||||    
T  31288436 tttggttgaaaagacaatccctatggatacgatactttactta-cactttattacttg 31288380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 14528247 - 14528171
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||| ||||||||  |||| || |||| || ||||||||||| | ||| ||||||||||| |||||    
T  14528247 aaataagtaacgtgagttgtttggacgaaacgacaatctatgtggatacgatactctacgtatcactttattacttg 14528171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 25939332 - 25939179
Alignment:
Q  51 taaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgttt---ttattgttcccaaataagtaacatgaattgtt 147  Q
    ||||| |||| || ||||||||||||||| || |||||||| ||| ||||| || |||||| |||   ||||||||| || | ||||||| |||||||||    
T  25939332 taaactttgccttattgcaaacatattaaatt-gcaaaactctaaaccctt-atctcttttatttattttattgttctcagacaagtaacgtgaattgtt 25939235  T
Q  148 tggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    ||||||||| |||||||| ||||||||||||| |||||||| |||||||| ||||||    
T  25939234 tggttgaaacgaaaatccttatggatacgatactttactta-cactttattacttga 25939179  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 27418472 - 27418389
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||| ||||    
T  27418472 ttgttccaaaataagtaacacgaattgtttggttgaaatgataatccatgtggatatgatactctacttatcactttattactt 27418389  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 8503052 - 8503147
Alignment:
Q  108 ttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||| |||||||||||||||||| ||||||   ||||||||||||||||||| ||||||| |||||| |||  | |||||||||| |||| |||||    
T  8503052 ttttttttttattgttcccaaattagtaacgcaaattgtttggttgaaatgacaatccatgtggatatgatcctctacttatcacgttattacttg 8503147  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 28770355 - 28770514
Alignment:
Q  38 caatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgt--tcccaaataagta 135  Q
    ||||||||| |||||||| ||| | |||||||| || ||||| || |||||||| ||| | |||| | |||||| |||||||| |  |||||||||||||    
T  28770355 caatcaaaacaggtaaactttgttatgttgcaagcaaattaaatt-gcaaaactctaaactcttt-tctcttttatttttattttattcccaaataagta 28770452  T
Q  136 acatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
     | |||||||||||| ||||| || | | | ||||||||||||| | |||||||||||||||    
T  28770453 gcgtgaattgtttggatgaaaagacattacctatggatacgatactctacttatcactttat 28770514  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 9239265 - 9239156
Alignment:
Q  106 tcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaa 205  Q
    |||||| ||||||||||||| ||||||||||||  |||| ||||||| ||| |||||| ||| |||||| ||| || ||||||||| ||||| ||||       
T  9239265 tcttttatttttattgttcctaaataagtaacactaattatttggttaaaacgaaaattcatgtggatatgatgttctacttatcattttattacttagg 9239166  T
Q  206 aaacaatttg 215  Q
    ||||||||||    
T  9239165 aaacaatttg 9239156  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 24090927 - 24091004
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||| |||||||||||  |||| || ||||||| ||||||||||||| || |||||||||||| ||||||    
T  24090927 aaataagtaacaagaattgtttggacgaaaggacaatccatgtggatacgatattctatttatcactttattacttga 24091004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 17743477 - 17743553
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  17743477 aaataagtaacacgaattgtttggacgaaacgataatccatgtggatacgatactctacttatcactttattacttg 17743553  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 20174636 - 20174712
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||||||||||||||||  |||| || ||||||| |||| | |||| | ||||||||||||||| |||||    
T  20174636 aaataagtaacatgaattgtttggacgaaacgacaatccatgtggaaatgatactctacttatcactttattacttg 20174712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 27909120 - 27909196
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| |||||||||||| |||||  | || |||| ||||||||||| | ||||||||||||||| |||||    
T  27909120 aaataagtaacgtgaattgtttggatgaaacaataacccatgtggatacgatactctacttatcactttattacttg 27909196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 25535372 - 25535295
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||| |||||||| ||  |||| || ||||| | ||||||||||| | ||||||||||||||| ||||||    
T  25535372 aaataagtaacaagaattgttcggacgaaaggacaatccctgtggatacgatactctacttatcactttattacttga 25535295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 25888245 - 25888309
Alignment:
Q  151 ttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||| || ||||||| ||||||||||| | ||||||||||||||| |||||  ||||||||||    
T  25888245 ttgaaacgacaatccatgtggatacgatactgtacttatcactttattacttggtaaacaatttg 25888309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 26603351 - 26603439
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||| | |||||||||   |||| || |||||||||  |||||||| | ||||||||||||| | |||||| ||||||||||    
T  26603351 aaataagtaacgtcaattgtttgcacgaaaagacaatccatataaatacgatactctacttatcacttttttacttgataaacaatttg 26603439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 45553236 - 45553140
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||| ||||||| ||||| |||||| ||||   ||| || ||||| | |  |||||||||||||||||||||||||| |||||| |||| |||||    
T  45553236 ttgttctcaaataattaacacgaattgcttggacaaaacgacaatccctgtaaatacgatattttacttatcactttattacttgataaacgatttg 45553140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 5777316 - 5777253
Alignment:
Q  125 ccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttactta 188  Q
    ||||||||||||| ||||||||||||  |||| || ||||||||| ||| ||||| ||||||||    
T  5777316 ccaaataagtaacgtgaattgtttggacgaaacgacaatccatatagattcgatactttactta 5777253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 25070234 - 25070138
Alignment:
Q  118 attgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||||||||||| |||||||| | |||| || || ||||| | ||||| ||||| | |||||| |||||||| | |||| |||| |||||    
T  25070234 attgttcccaaataagtaacgtgaattgtctagttggaacgacaatccttgtggatgcgatactctactta-cactttattatttgataaacgatttg 25070138  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 31805010 - 31805051
Alignment:
Q  228 catcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    |||||||||||||||| |||||  ||||||||||||||||||    
T  31805010 catcaagtttttggcgtcgttgccggagattgttgatatttt 31805051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 25196108 - 25196032
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||||||  |||| || || || | |||||| |||| | ||||||||||||||| |||||    
T  25196108 aaataagtaacgtgaattgtttggacgaaaggacaacccctgtggatatgatactctacttatcactttattacttg 25196032  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 29719232 - 29719308
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  ||||||||||   |||| || ||||| | ||||||||||| | ||||||||||||||| |||||    
T  29719232 aaataagtaacgcgaattgtttgaacgaaacgacaatccttgtggatacgataatctacttatcactttattacttg 29719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 32085561 - 32085473
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||| ||  ||||| |  |||| || ||||||| |||||| |||| | ||||||||||||||| |||||  ||||||||||    
T  32085561 aaataagtaacacgagctgtttagacgaaacgacaatccatgtggatatgatactctacttatcactttattacttggtaaacaatttg 32085473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 45621882 - 45621958
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||||||  |||| || ||||| | | ||||||||| | ||||| ||||||||| |||||    
T  45621882 aaataagtaacacgaattgtttggacgaaacgacaatccttgtagatacgatactctacttctcactttattacttg 45621958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 7148183 - 7148023
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||||||||||||||| ||||||||  |||  ||||||||||| |||||||||| |||||| | | | | |||| |||||| |||| | |||||||||    
T  7148183 aacattctgcaatcaaaacaggtaaactatgcactgttgcaaacaaattaactttgaaaaactctgaactc-ttatctcttttattttattttgttccca 7148085  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttat 189  Q
    |||||||||| ||||| |||  ||||||| || ||||||| |||| |||||| | |||||||    
T  7148084 aataagtaacgtgaatcgttctgttgaaacgacaatccatgtggagacgatactctacttat 7148023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 821507 - 821591
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||||||||||||||||||||||    |||| |||||||||| ||||||||||| | ||||||||||||||| |||||    
T  821507 ttgttcccaaataagtaacatgaattgtttacacgaaacgaaaatccatgtggatacgatactctacttatcactttattacttg 821591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 28729051 - 28728965
Alignment:
Q  118 attgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||| |||||||  ||||||||||||||||| || |||| || ||||||||||| | ||||||||||||||| ||||||    
T  28729051 attgttcccaaacaagtaacgcgaattgtttggttgaaacgacaatctatgtggatacgatactctacttatcactttattacttga 28728965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 8557033 - 8557200
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||||||||||||||| |||||||| || || |||| |||||||||||  || |||||||| ||| ||||| ||   |||| |||| | |||||||||    
T  8557033 aacattctgcaatcaaaagaggtaaactttactatgtttcaaacatattatatt-gcaaaactctaaaccctt-atcctttttattttattttgttccca 8557130  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    ||||||||||   ||||||||   ||||| || ||||||| ||||||||||| | |||||||||||||||    
T  8557131 aataagtaacgcaaattgtttaaatgaaacgacaatccatgtggatacgatactctacttatcactttat 8557200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 21302016 - 21301940
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  ||||||| ||||||| ||||||||||| | ||||||||||||||| |||||    
T  21302016 aaataagtaactcgaattgtttggacgaaatgacaatccatgtggatacgatactctacttatcactttattacttg 21301940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 12759498 - 12759397
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatt 213  Q
    |||||||||||||||||||||||   | ||| |||| |||||| || ||| | | ||||||||||| | ||||||||||||||| |||||  ||||||||    
T  12759498 ttttattgttcccaaataagtaaagcggattttttgtttgaaacgacaatacttgtggatacgatactctacttatcactttattacttggtaaacaatt 12759399  T
Q  214 tg 215  Q
    ||    
T  12759398 tg 12759397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 16245730 - 16245806
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  ||||||| ||||||| |||||| |||| | ||||||||||||||| |||||    
T  16245730 aaataagtaacgagaattgtttggacgaaatgataatccatgtggatatgatactctacttatcactttattacttg 16245806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 20429808 - 20429721
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaattt 214  Q
    |||||||||||  ||||||| ||| |||||||| ||||| ||| ||||||||| | ||||||||| ||||| |||||  |||||||||    
T  20429808 aaataagtaacgcgaattgtgtggatgaaatgacaatccttatagatacgatactctacttatcattttattacttggtaaacaattt 20429721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20885420 - 20885370
Alignment:
Q  1 taaatagagaggattcctaacagctgcaaacattctgcaatcaaaataggt 51  Q
    |||||||||||||| |||||| || || |||||||||||||||||||||||    
T  20885420 taaatagagaggatgcctaaccgccgctaacattctgcaatcaaaataggt 20885370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 7147985 - 7147936
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||| |||||||||||||||||||||||| | ||||||| |||||||    
T  7147985 aatccgaccatcaagtttttggcgccgttgttagggattgtttatatttt 7147936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 12805992 - 12806041
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||| |||||||||||||| |||||||| |||||||||| |||||||    
T  12805992 aatccgaccatcaagtttttggggccgttgtcggagattgttaatatttt 12806041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 8319137 - 8319061
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||||||||||||||   |||| || ||||| | ||||||| ||||| |||||||||||| || |||||    
T  8319137 aaataagtaacatgaattgtttgtacgaaacgataatccctgtggatactatattctacttatcacttcattacttg 8319061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 12805891 - 12805967
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||   |||||||||| ||||| || ||||||| |||||| |||| | ||||||||||||||| |||||    
T  12805891 aaataagtaacgcaaattgtttggatgaaacgacaatccatgtggatatgatactctacttatcactttattacttg 12805967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 17438432 - 17438508
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||||||  |||| || ||||||| |||||| |||| | ||||||||| ||||| |||||    
T  17438432 aaataagtaacgtgaattgtttggacgaaacgacaatccatgtggatatgatactctacttatcattttataacttg 17438508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 4650328 - 4650253
Alignment:
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||  |||||||||||  |||| || ||||| | ||||||||||| |||||| |||||||||| |||||    
T  4650328 aataagtaacgcgaattgtttgggcgaaaggacaatccctgtggatacgatactttactcatcactttattacttg 4650253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 18458467 - 18458513
Alignment:
Q  169 tggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||| | ||||||||||||||| |||||| ||||||||||    
T  18458467 tggatacgatactctacttatcactttattacttgataaacaatttg 18458513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 932738 - 932689
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||||||||||||| || ||||| |||| || |||||||||||||||    
T  932738 aatccgatcatcaagttatttgcgccattgtcggggattgttgatatttt 932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 3116420 - 3116507
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||||||||| ||||||||||||  |||| || ||||| | ||||||| |||  | |||||||||||||| |||||  ||||||||||    
T  3116420 aaataagtaacgtgaattgtttggacgaaacgacaatccctgtggatactata-ctcacttatcactttattacttggtaaacaatttg 3116507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 8765181 - 8765145
Alignment:
Q  161 aatccatatggatacgatattttacttatcactttat 197  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8765181 aatccatgtggatacgatactttacttatcactttat 8765145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 15369 - 15542
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtt-tttattgttccca 127  Q
    |||||||||||||||||| |||||||| | ||| ||||||||||| ||||||||||| ||||| ||| | |||| |  ||||| || | | |||||| ||    
T  15369 aacattctgcaatcaaaacaggtaaacttcgctctgttgcaaacagattaactttgcgaaactctaaactcttt-tcacttttattatattttgttctca 15467  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||| |||||| |||| ||| || || ||||||| ||||||||||| | ||| ||| ||||||| |||||    
T  15468 aataagtaacgtgaattatttgattg-aacgacaatccatgtggatacgatactctacatattactttattacttg 15542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 12219 - 12119
Alignment:
Q  115 tttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaattt 214  Q
    ||||||||||||||||||||| |   | |||| | |||||||||| |||||||||| |||||||| ||||||||||| ||||| |||||  |||||||||    
T  12219 tttattgttcccaaataagtagcgcaagttgtcttgttgaaatgacaatccatatgaatacgatagtttacttatcagtttattacttggtaaacaattt 12120  T
Q  215 g 215  Q
    |    
T  12119 g 12119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 3629 - 3553
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||| |||||||| ||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  3629 aaataagtaacaagaattgttcggacgaaaggacaatccatgtggatacgatactctacttatcactttattacttg 3553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 17837675 - 17837527
Alignment:
Q  65 ttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatc 164  Q
    ||||||||||||||| || |||||||| ||||||||| || |||||  ||| | |||||||||||||||||||  ||||||||| |   |||||| ||||    
T  17837675 ttgcaaacatattaaatt-gcaaaactctaagccctt-atctctttattttattttgttcccaaataagtaacgcgaattgtttagacaaaatgacaatc 17837578  T
Q  165 catatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    | | |||||| |||| | ||||||| ||||||| |||||  ||||||||||    
T  17837577 cttgtggatatgatactctacttataactttattacttggtaaacaatttg 17837527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 24306281 - 24306382
Alignment:
Q  101 ttatttcttttgtttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcac 200  Q
    |||| |||||| |||||||||||| ||||||||||||  ||||| ||||||||||| |  ||||| | ||||||||||| | ||||||||||||||| ||    
T  24306281 ttatctcttttatttttattgttctcaaataagtaacgcgaattatttggttgaaacg-caatccctgtggatacgatactctacttatcactttattac 24306379  T
Q  201 ttg 203  Q
    |||    
T  24306380 ttg 24306382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 24267685 - 24267860
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctt-tatttcttttgtttttattgttccca 127  Q
    |||||||||||||||||| | |||||  ||||| |||||||||||||||||  |||||||||| ||| ||||| | ||| |||  ||| | ||  |||||    
T  24267685 aacattctgcaatcaaaacaagtaaattttgctctgttgcaaacatattaa-attgcaaaactctaaacccttgtctttttttattttattttaatccca 24267783  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||| ||||||| || |  ||||  | |||| ||||||||| |||| | ||||||||| ||||| ||||||    
T  24267784 aataagtaacgtgaattgattagacgaaacaacaatctatatggatatgatactatacttatcattttattacttga 24267860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 29242617 - 29242529
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    ||||| |||||  ||||||||||| ||||| || ||||  ||||||||||||| | ||||||||||||||| |||||| ||||||||||    
T  29242617 aaatatgtaacgcgaattgtttggatgaaacgacaatcactatggatacgatactctacttatcactttattacttgataaacaatttg 29242529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 6501456 - 6501580
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttttattgttcccaa 128  Q
    ||||||||||||| |||| || ||||| ||||| |||| |||| | ||||| || |||||||| ||| ||||| || | | ||  |||||||| ||||||    
T  6501456 aacattctgcaattaaaacagctaaactttgctatgtttcaaatagattaaatt-gcaaaactctaaacccttcatctttatttattttattgctcccaa 6501554  T
Q  129 ataagtaacatgaattgtttggttga 154  Q
    ||||||| | ||||||||||||||||    
T  6501555 ataagtatcgtgaattgtttggttga 6501580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25958219 - 25958154
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgata 179  Q
    |||||||||||||||||||||||||| |||||| |||||| || || ||||||| |||||| ||||    
T  25958219 ttttattgttcccaaataagtaacataaattgtctggttggaacgacaatccatgtggatatgata 25958154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 12208699 - 12208623
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  |||| || ||||||| |||||| |||||| ||||||||||||||| |||||    
T  12208699 aaataagtaacgcgaattgtttggacgaaacgacaatccatgtggatatgatattctacttatcactttattacttg 12208623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 17610257 - 17610333
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| ||||||||||||  |||| || ||||||| ||||||||||| | ||||||| ||||||| |||||    
T  17610257 aaataagtaacgtgaattgtttggacgaaacgacaatccatgtggatacgatactctacttataactttattacttg 17610333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 21449187 - 21449111
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||||| ||||||||||  |||| || ||||| | ||||||||||| | ||||||||||||||| |||||    
T  21449187 aaataagtaacataaattgtttggccgaaacgacaatccttgtggatacgatactctacttatcactttattacttg 21449111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 21666609 - 21666685
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  |||| || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  21666609 aaataagtaacgagaattgtttggacgaaaggacaatccatgtggatacgatactctacttatcactttattacttg 21666685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 25405631 - 25405707
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| |||| |||||||  |||| || ||||| | ||||||||||| ||||||||||||||||| |||||    
T  25405631 aaataagtaacgtgaactgtttggacgaaacgacaatccttgtggatacgatactttacttatcactttattacttg 25405707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 27117621 - 27117795
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaacatattaactttgcaaaactgtaagccctttatttcttttgtttt-tattgttccca 127  Q
    |||||| ||||||||||| |||||||  || || |||||||||   ||||||||| ||||||  ||| ||||| || || ||| |||| | ||||||||     
T  27117621 aacattttgcaatcaaaacaggtaaaattttctctgttgcaaattgattaacttttcaaaacactaaaccctt-atctcgtttattttattttgttccct 27117719  T
Q  128 aataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||    ||||||||||||||| || ||| ||| || |||| ||| | ||||||||||||||| |||||    
T  27117720 aataagtaacgcagattgtttggttgaaacgacaattcatgtgaatacaatactctacttatcactttattacttg 27117795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 24306950 - 24307026
Alignment:
Q  120 tgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttat 197  Q
    |||||||||||||||||| ||||||| || ||||||| || ||||| |||| |||||||| | |||||| ||||||||    
T  24306950 tgttcccaaataagtaacgtgaattgcttagttgaaacgacaatccctatgaatacgatactctactta-cactttat 24307026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 13345337 - 13345425
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatttg 215  Q
    |||||||||||  |||||||||||   ||| || ||||||| |||||| |||| | ||||||||||||||| |||||  ||||||||||    
T  13345337 aaataagtaacgcgaattgtttggacaaaacgacaatccatgtggatatgatactctacttatcactttattacttggtaaacaatttg 13345425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 26541007 - 26540918
Alignment:
Q  113 tttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||| |||||||||||||||   |||||| | |||| ||||| ||||| | ||||||||||| | |||||| |||||||| |||||    
T  26541007 tttttattgctcccaaataagtaacgcaaattgtctagttggaatgataatccttgtggatacgatactctactta-cactttattacttg 26540918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 16787714 - 16787815
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaacaatt 213  Q
    |||||||||||  |||||||||||   ||||||||||   ||| || |||| || || |||||||| | ||||||||||||||| |||||| |||| |||    
T  16787714 ttttattgttcaaaaataagtaacgcaaattgtttgggcaaaacgacaatctatgtgaatacgatactctacttatcactttattacttgataaacgatt 16787813  T
Q  214 tg 215  Q
    ||    
T  16787814 tg 16787815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 17017705 - 17017770
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgata 179  Q
    ||||||||||||  |||||||||| |||||||  | |||| ||||||||||||| | |||||||||    
T  17017705 ttttattgttccataataagtaacgtgaattgcctagttggaatgaaaatccatgtcgatacgata 17017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 21334720 - 21334797
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttga 204  Q
    |||||||||||  |||||||||||  ||||||| ||| | |  |||||||||| | ||||||||||||||| ||||||    
T  21334720 aaataagtaacgagaattgtttggaagaaatgacaattcctccggatacgatactatacttatcactttattacttga 21334797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 36976405 - 36976360
Alignment:
Q  227 tcatcaagtttttggcgccgttgttggagattgttgatatttttga 272  Q
    |||||| ||||||||| || ||||||| ||||||||||||||||||    
T  36976405 tcatcatgtttttggccccattgttggggattgttgatatttttga 36976360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 34481075 - 34480991
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||| ||||||||||||| ||||  ||||| |||||||| | ||  | ||||||  ||||| ||||||||||||||| |||||    
T  34481075 ttgttctcaaataagtaacacgaatgttttggatgaaatgacagtcattgtggatataatattctacttatcactttattacttg 34480991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 51473911 - 51473947
Alignment:
Q  161 aatccatatggatacgatattttacttatcactttat 197  Q
    ||||||||||||||||||| | |||||||||||||||    
T  51473911 aatccatatggatacgatactctacttatcactttat 51473947  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 11383 - 11251
Alignment:
Q  82 ttgcaaaactgtaagccctttatttcttttgtttttatt-gttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatat 180  Q
    |||||||||| ||| ||||| || |||||| |||||||| ||||||||||||||||    ||||||||||||||||  | ||||||| | |||| ||||     
T  11383 ttgcaaaactctaaaccctt-atctcttttatttttatttgttcccaaataagtaatgcaaattgtttggttgaaacaacaatccatgtagatatgatac 11285  T
Q  181 tttacttatcactttatcacttgaaaaacaattt 214  Q
    | ||||||||||||||| | |||| |||||||||    
T  11284 tctacttatcactttattatttgataaacaattt 11251  T

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Target: scaffold0019; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 11419 - 11377
Alignment:
Q  29 aacattctgcaatcaaaataggtaaacattgctttgttgcaaa 71  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  11419 aacattctgcaatcaaaacaggtaaactttgctttgttgcaaa 11377  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 76369 - 76327
Alignment:
Q  230 tcaagtttttggcgccgttgttggagattgttgatatttttga 272  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  76369 tcaagtttttggcgccgttgttggggattgttgatatttttga 76327  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 35996 - 36071
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||||||||| ||||| ||||| ||||| || ||| ||| ||||||||||| | ||||||||||||||| ||||    
T  35996 aaataagtaacacgaattatttggatgaaacgacaattcatgtggatacgatactctacttatcactttattactt 36071  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 78705 - 78616
Alignment:
Q  114 ttttattgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||| |||||||||||||  | |||| || ||||||| || ||||| ||||||||||||  || |||||||| ||||| |||||    
T  78705 ttttattgttgccaaataagtaacgcggattggtttgttgaaacgacaatccttatggatacgatgcttaacttatcagtttattacttg 78616  T

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Target: scaffold0427 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 2909 - 2961
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttttga 272  Q
    ||||||||||||||||||||||| |||||   ||||||||||| |||||||||    
T  2909 aatccgatcatcaagtttttggcaccgttaccggagattgttgttatttttga 2961  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 6393 - 6310
Alignment:
Q  119 ttgttcccaaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcactt 202  Q
    |||||| |||||||||||   |||||||||||  ||||  | ||||||| ||||||||||| ||||||||| ||||||| ||||    
T  6393 ttgttctcaaataagtaatgcgaattgtttggacgaaacaacaatccatgtggatacgatactttacttatgactttattactt 6310  T

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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 35635 - 35553
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttgaaaaac 209  Q
    ||||||||||   |||||||||||  |||| |||||||||| ||||||| ||| | || |||||||||||| |||||| ||||    
T  35635 aaataagtaaggcgaattgtttggacgaaacgaaaatccatgtggatacaatactctatttatcactttattacttgataaac 35553  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 24982 - 24933
Alignment:
Q  220 aatccgatcatcaagtttttggcgccgttgttggagattgttgatatttt 269  Q
    ||||||| ||||| ||||||||||||||||  || |||||||||||||||    
T  24982 aatccgaccatcatgtttttggcgccgttgccggggattgttgatatttt 24933  T

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Target: scaffold0638 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 824 - 900
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    ||||||||||| || |||||||||  |||| || ||||   |||||||||||| | ||||||||||||||| |||||    
T  824 aaataagtaacgtggattgtttggacgaaacgacaatctcaatggatacgatactctacttatcactttattacttg 900  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 70011 - 69935
Alignment:
Q  127 aaataagtaacatgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcactttatcacttg 203  Q
    |||||||||||  |||||||||||  |||| || ||||| | || |||||||| ||||||| ||||||||| |||||    
T  70011 aaataagtaacgagaattgtttggacgaaacgacaatccttgtgtatacgatactttacttgtcactttattacttg 69935  T

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