View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_18 (Length: 279)
Name: NF16431_low_18
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 929881 - 929746
Alignment:
| Q |
5 |
aagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttgaaggaaactcaatg |
104 |
Q |
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| T |
929881 |
aagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttgaaggaaactcaatg |
929782 |
T |
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| Q |
105 |
aatgtaagcggcatagtgtcgcatattaaaatggtt |
140 |
Q |
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| T |
929781 |
aatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 929441 - 929392
Alignment:
| Q |
230 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgt |
279 |
Q |
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| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgt |
929392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 1201514 - 1201558
Alignment:
| Q |
235 |
atacatttttcatatcatacaaaaacttcacaaggtccttattgt |
279 |
Q |
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| T |
1201514 |
atacatttttcatatcatacaaaaacttcacgaggtcctgattgt |
1201558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
153 |
ggatggaatcgaggactaaaccgttaaacggttat |
187 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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