View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_19 (Length: 277)
Name: NF16431_low_19
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 13883965 - 13884221
Alignment:
| Q |
1 |
gcattttaactatcctccgatgacctctgaggactctcttacccttcgtcagcatccctctagcttcaccacaagcttcttccccaggtctattttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13883965 |
gcattttaactatcctccgatgacctctgaggactctcttccccttcgtcagcatccctctagcttcaccacaagcttcttccccaggtctattttgata |
13884064 |
T |
|
| Q |
101 |
ttgtcaattcacactatcatccttttctttaagcactgcatccaaaccagcatctccacaaactgaaaaattaacctcttcaaagtttccatttggagat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884065 |
ttgtcgattcacactatcatccttttctttaagcactgcatccaaaccagcatctccataaactgaaaaattaacctcttcaaagtttccatttggagat |
13884164 |
T |
|
| Q |
201 |
aactcgcactcttctctttcacttttgaactgtcgatcgattcttcttggtatctgc |
257 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13884165 |
aactcacactcttctcttttacttttgaactgtcgatcgattcttcttggtatctgc |
13884221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 16024710 - 16024912
Alignment:
| Q |
57 |
cctctagcttcaccacaagcttcttccccaggtctattttgatattgtcaattcacactatcatccttttctttaagcactgcatccaaaccagcatctc |
156 |
Q |
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| T |
16024710 |
cctctggcttcaccacaaacttcttcgccacgtctattttgatattgccgtttcaaaccaccatcatttcctttatgcactgcctccgaaccagcatctc |
16024809 |
T |
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| Q |
157 |
cacaaactgaaaaattaacctcttcaaagtttccatttggagataactcgcactcttctctttcacttttgaactgtcga-tcgattcttcttggtatct |
255 |
Q |
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|| |||||| ||||||| |||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||| || ||||||| ||||||||||| |
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| T |
16024810 |
cataaactgcaaaattatcctcttcaaagtctccatttggagataactcaccctcttctctttcgcttttgaactgtggattcgattcctcttggtatct |
16024909 |
T |
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| Q |
256 |
gca |
258 |
Q |
| |
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||| |
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| T |
16024910 |
gca |
16024912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 13882295 - 13882414
Alignment:
| Q |
140 |
atccaaaccagcatctccacaaactgaaaaattaacctcttcaaagtttccatttggagataactcgcactcttctctttcacttttgaactgtcga-tc |
238 |
Q |
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|||||||||||||| |||| ||||||||||| || |||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| || | |
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| T |
13882295 |
atccaaaccagcatttccataaactgaaaaactatcctcttcaaagtttccatttcaagataactctccctcttctctttggcttttgaactgttgattt |
13882394 |
T |
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| Q |
239 |
gattcttcttggtatctgca |
258 |
Q |
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|||||||||||||||||||| |
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| T |
13882395 |
gattcttcttggtatctgca |
13882414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 40165930 - 40165839
Alignment:
| Q |
168 |
aaattaacctcttcaaagtttccatttggagataactcgcactcttctctttcacttttgaactgtcga-tcgattcttcttggtatctgca |
258 |
Q |
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|||||| |||||||||||| ||| |||||||||||||| | ||||||| |||| ||||||||||||||| | ||||| ||||| |||||||| |
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| T |
40165930 |
aaattatcctcttcaaagtctccgtttggagataactcaccctcttctttttcgcttttgaactgtcgatttgattcctcttgatatctgca |
40165839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 13878644 - 13878742
Alignment:
| Q |
160 |
aaactgaaaaattaacctcttcaaagtttccatttggagataact----cgcactcttctctttcac-ttttgaactgtcgatcgattcttcttggtat |
253 |
Q |
| |
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|||||| |||||| ||| |||||||| ||||||||||||||||| | | ||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
13878644 |
aaactgcaaaattgtcctattcaaagtctccatttggagataactcaccctcgctcttctctttagctttttgaactgtcgatagattcttcttggtat |
13878742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 13871875 - 13871912
Alignment:
| Q |
200 |
taactcgcactcttctctttcacttttgaactgtcgat |
237 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |
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| T |
13871875 |
taactcaccctcttctctttcacttttgaactgtcgat |
13871912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 26202313 - 26202420
Alignment:
| Q |
127 |
ctttaagcactgcatccaaaccagcatctccacaaactgaaaaattaacctcttcaaagtttccatttggagataactcgcactcttctctttcactttt |
226 |
Q |
| |
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||||| ||||||| |||| |||||||| | || |||||| ||| ||| |||||||||||| |||||| ||||| || || | |||||||||||||||||| |
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| T |
26202313 |
ctttatgcactgcctccagaccagcatttgcataaactgcaaagttatcctcttcaaagtctccattaggagacaattcaccctcttctctttcactttt |
26202412 |
T |
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| Q |
227 |
gaactgtc |
234 |
Q |
| |
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||| |||| |
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| T |
26202413 |
gaagtgtc |
26202420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 29625515 - 29625622
Alignment:
| Q |
127 |
ctttaagcactgcatccaaaccagcatctccacaaactgaaaaattaacctcttcaaagtttccatttggagataactcgcactcttctctttcactttt |
226 |
Q |
| |
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||||| ||||||| |||| ||||| || | || |||||| ||| ||| |||||||||||| |||||| ||||| || || | |||||||||||||||||| |
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| T |
29625515 |
ctttatgcactgcctccagaccagaatttgcataaactgcaaagttatcctcttcaaagtctccattaggagacaattcaccctcttctctttcactttt |
29625614 |
T |
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| Q |
227 |
gaactgtc |
234 |
Q |
| |
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||| |||| |
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| T |
29625615 |
gaagtgtc |
29625622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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