View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16431_low_23 (Length: 257)
Name: NF16431_low_23
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 42302672 - 42302499
Alignment:
| Q |
19 |
agtactaacaaactactctctgctgccaacttcaccgaaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacaaacggattgcgtgtc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42302672 |
agtactaacaaactactctctgctgccaacttcaccggaatcgctctcttcgccctcctctacacggagatgcaattcaaggacaaatggattgcgtgtc |
42302573 |
T |
|
| Q |
119 |
tttctctcggcgtacagactttccgtaccaaatcatcccaacagttagttcaattcatcatcatcactattata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42302572 |
tttctctcggcgtacagactttccgtaccaaatcatcccaacagttagttcaattcatcatcatcactattata |
42302499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 2368892 - 2368719
Alignment:
| Q |
19 |
agtactaacaaactactctctgctgccaacttcaccgaaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacaaacggattgcgtgtc |
118 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| || ||||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2368892 |
agtactaacaaactactctctacttccaacttcatcggaatcgctctcttcgccctcatttgcacggagatgcaattcaagggcaaatggattgcgtgtc |
2368793 |
T |
|
| Q |
119 |
tttctctcggcgtacagactttccgtaccaaatcatcccaacagttagttcaattcatcatcatcactattata |
192 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2368792 |
tttctttcggcgtacagactttccgtaccaaatcatcccaacagttagttcaatttatcatcatcactattata |
2368719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 1343455 - 1343348
Alignment:
| Q |
48 |
cttcaccgaaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacaaacggattgcgtgtctttctctcggcgtacagactttccgtacc |
147 |
Q |
| |
|
|||||| | |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
1343455 |
cttcactggaatcgctctcttcgccctcctccgcgcggagatgcaattcaaggacaaatggattgcctgcctttctctcggcgaacagactttccgtacc |
1343356 |
T |
|
| Q |
148 |
aaatcatc |
155 |
Q |
| |
|
|||||||| |
|
|
| T |
1343355 |
aaatcatc |
1343348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 14208274 - 14208188
Alignment:
| Q |
26 |
acaaactactctctgctgccaacttcaccgaaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacaaacggattg |
112 |
Q |
| |
|
|||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
14208274 |
acaaactactcttcgttgccaacttcactggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattg |
14208188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 14208181 - 14208143
Alignment:
| Q |
154 |
tcccaacagttagttcaattcatcatcatcactattata |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14208181 |
tcccaagagttagttcaattcatcatcatcactattata |
14208143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University