View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16431_low_25 (Length: 238)
Name: NF16431_low_25
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17568488 - 17568702
Alignment:
| Q |
1 |
ttttgttgtttgaaatttgtacaaatttttattattttgattaatgtatactaccttggtctcaaatatatgcagaaaagaaaaagtttaacaaagttga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17568488 |
ttttgttgtttgaaatttgtacatattttcattattttgattagtgtatactaccttggtctcaaatatatgcagagaagaaaaagtttaacaaagttga |
17568587 |
T |
|
| Q |
101 |
tgtatttagatnnnnnnnttgatcagatgcatcctatgaagcacatttacttctcagattaggcgtgt-caggtgtccgacacgtgttgtgtccgacacg |
199 |
Q |
| |
|
||||| ||| | |||||||||||||| ||||||| ||| ||||||||||| |||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
17568588 |
tgtatatag-ttaaaaaattgatcagatgcat-------agcacatgcactcctcagattaggtgtgtccaggtgtccgacatgtgttgtgtttgacacg |
17568679 |
T |
|
| Q |
200 |
acaccaacactacacttgtaatt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17568680 |
acaccaacactacacttgtaatt |
17568702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 9778601 - 9778547
Alignment:
| Q |
157 |
gattaggcgtgtca-ggtgtccgacacgtgttgtgtccgacacgacaccaacact |
210 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
9778601 |
gattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacgacaccgacact |
9778547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 5409794 - 5409848
Alignment:
| Q |
157 |
gattaggcgtgtca-ggtgtccgacacgtgttgtgtccgacacgacaccaacact |
210 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5409794 |
gattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacact |
5409848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 13770792 - 13770746
Alignment:
| Q |
157 |
gattaggcgtgt-caggtgtccgacacgtgttgtgtccgacacgaca |
202 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
13770792 |
gattaggcgtgttccggtgtcggacacgtgttgtgtccgacacgaca |
13770746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 22197690 - 22197761
Alignment:
| Q |
153 |
ctcagattaggcgtg-tcaggtgtccgacacgtgttgtgtccgacacgacaccaacact-acacttgtaatt |
222 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22197690 |
ctcagattaggcgtgatccggtgtcggacacgtgtcatgtccgacacgacactgacactgacacttgtaatt |
22197761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 1486646 - 1486721
Alignment:
| Q |
136 |
atgaagcacatttacttctcagattaggcgtgtca-ggtgtccgacacgtgttgtgtccgacacgacaccaacact |
210 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1486646 |
atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacact |
1486721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 15724483 - 15724548
Alignment:
| Q |
134 |
ctatgaagcacatttacttctcagattaggcgtgtca-ggtgtccgacacgtgttgtgtccgacac |
198 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
15724483 |
ctatgaagcacataaactcctcggattaggcgtgttttggtgtctgacacgtgttgtgtccgacac |
15724548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University