View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_26 (Length: 233)
Name: NF16431_low_26
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_26 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 48912703 - 48912588
Alignment:
| Q |
1 |
catgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48912703 |
catgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaat |
48912604 |
T |
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| Q |
101 |
accagttgtgctccat |
116 |
Q |
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|||||||||||||||| |
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| T |
48912603 |
accagttgtgctccat |
48912588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 48965161 - 48965243
Alignment:
| Q |
12 |
attttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttc |
94 |
Q |
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| T |
48965161 |
attttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttc |
48965243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 48957974 - 48958022
Alignment:
| Q |
10 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaacctt |
58 |
Q |
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| T |
48957974 |
tgatttcctcagcttcatcaccaccgtccatcaatctcttcacagcctt |
48958022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 6860 - 6762
Alignment:
| Q |
10 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttg |
108 |
Q |
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| T |
6860 |
tgattttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttg |
6762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10851 - 10748
Alignment:
| Q |
1 |
catgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaat |
100 |
Q |
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||||| |||||||| |||||||| ||| || | |||||||||||| ||||||||||||||||||| |||||||| |||| ||||||| | |||||||| |
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| T |
10851 |
catgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaat |
10752 |
T |
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| Q |
101 |
acca |
104 |
Q |
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|||| |
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| T |
10751 |
acca |
10748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 13440040 - 13440124
Alignment:
| Q |
20 |
agcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaatacca |
104 |
Q |
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||||||||||||| | |||||||||| | ||||| ||||||| || |||||||| | |||| ||||||||| ||| ||| |||| |
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| T |
13440040 |
agcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacacca |
13440124 |
T |
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