View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16431_low_27 (Length: 228)

Name: NF16431_low_27
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16431_low_27
NF16431_low_27
[»] chr5 (5 HSPs)
chr5 (7-228)||(40180476-40180697)
chr5 (78-183)||(38605052-38605157)
chr5 (78-166)||(40181262-40181350)
chr5 (78-166)||(38605743-38605831)
chr5 (87-166)||(41885913-41885992)
[»] chr6 (2 HSPs)
chr6 (78-156)||(410918-410996)
chr6 (96-157)||(9161362-9161423)
[»] chr8 (5 HSPs)
chr8 (78-157)||(44459581-44459660)
chr8 (78-157)||(44467114-44467193)
chr8 (78-146)||(34502314-34502382)
chr8 (78-146)||(44460294-44460362)
chr8 (78-146)||(44467827-44467895)
[»] chr1 (1 HSPs)
chr1 (78-146)||(46359164-46359232)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 40180476 - 40180697
Alignment:
Q  7 tgaagcaccatcttttgacatatggaagcagcttgctggagtacatcagtactgtaatctatgtcacagatagcttgcagtgtaaagatatatgtatctt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  40180476 tgaagcaccatcttttgacatatggaagcggcttgctggagtacatcagtactgtaatctatgccacaaatagcttgcagtgtaaagatatatgtatctt 40180575  T
Q  107 gatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaatatatccatagaaactgtaacctcctactat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180576 gatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaatatatccatagaaactgtaacctcctactat 40180675  T
Q  207 cctcctacctccccccatatat 228  Q
    | ||||||||  ||||||||||    
T  40180676 catcctacctttccccatatat 40180697  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 38605052 - 38605157
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaata 177  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |  ||||||| ||| |||| |||||| | |    
T  38605052 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 38605151  T
Q  178 tatcca 183  Q
    ||||||    
T  38605152 tatcca 38605157  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 40181262 - 40181350
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 166  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||    
T  40181262 agcttgcagtgtatagtaatatgtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttcctt 40181350  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 38605743 - 38605831
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 166  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||||| ||| ||||    
T  38605743 agcttgaagtgtaaagtaatatgtgtcttgatttggcacacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgcctt 38605831  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 41885992 - 41885913
Alignment:
Q  87 tgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 166  Q
    |||||||  ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  41885992 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgtgtgcagctttccctt 41885913  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 410996 - 410918
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgca 156  Q
    ||||| || ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  410996 agcttccaatgtaaagatgtatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttcaagtgca 410918  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 9161423 - 9161362
Alignment:
Q  96 atatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcag 157  Q
    |||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||    
T  9161423 atatgtctcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcag 9161362  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 44459660 - 44459581
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcag 157  Q
    ||||||||| ||||||  ||||||||| |||||||||||||| |||||| |||||||  |||||||||| ||||||||||    
T  44459660 agcttgcagagtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcag 44459581  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 44467193 - 44467114
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcag 157  Q
    ||||||||| ||||||  ||||||||| |||||||||||||| |||||| |||||||  |||||||||| ||||||||||    
T  44467193 agcttgcagagtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcag 44467114  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 34502314 - 34502382
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaac 146  Q
    ||||| |||||||||| | ||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  34502314 agctttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaac 34502382  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 44460362 - 44460294
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaac 146  Q
    ||||||||| |||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  44460362 agcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaac 44460294  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 44467895 - 44467827
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaac 146  Q
    ||||||||| |||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  44467895 agcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaac 44467827  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 46359232 - 46359164
Alignment:
Q  78 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaac 146  Q
    ||||||||| |||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  46359232 agcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaac 46359164  T

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