View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_28 (Length: 204)
Name: NF16431_low_28
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 24270241 - 24270065
Alignment:
| Q |
10 |
cagaacctgtgctgttcaccaaaaagaaaaacatggcgagtggtaggcaaattggtgtagctttagatttctccaaaggaagcaagatcgctctcaaatg |
109 |
Q |
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| T |
24270241 |
cagaacttgtgctgttcaccaaaaagaaaaacatggcgagtggaaggcaaattggtgtagctttagatttctccaaaggaagcaagatcgctctcaaatg |
24270142 |
T |
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| Q |
110 |
ggctatcgataatcttcttcgtaccggtgatacactctatatcgttcatgtcaatcattcccatcccactgaatctc |
186 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24270141 |
ggctatcgacaatcttcttcgtaccggtgatacactctatatcgttcatgtcaatcattcccatcccactgaatctc |
24270065 |
T |
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