View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_3 (Length: 628)
Name: NF16431_low_3
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_3 |
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| [»] scaffold0133 (3 HSPs) |
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| [»] scaffold0256 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 284 - 628
Target Start/End: Complemental strand, 9909 - 9567
Alignment:
| Q |
284 |
cacttgccaacttgatgccatcccaccatacttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataattagtattacaattat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9909 |
cacttgccaacttgatgccatcccaccatacttgatccacttgcacttcaggtacactgccaa-cttgaaatattaaataataattagtattacaattat |
9811 |
T |
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| Q |
384 |
ttggtattggattctctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnn |
483 |
Q |
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| T |
9810 |
ttggtattggattttctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaa-ttttgttttttt |
9712 |
T |
|
| Q |
484 |
nnnnnnnatggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaaga |
583 |
Q |
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| T |
9711 |
ccctttcatggccatgtgccttcaacacttgttttttcccactgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaaga |
9612 |
T |
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| Q |
584 |
actacatccactgatttaatatataatctttgaaaacaaataaca |
628 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9611 |
actacatccactgatttaatatataatctttgaaaacaaataaca |
9567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 271 - 628
Target Start/End: Complemental strand, 14261 - 13915
Alignment:
| Q |
271 |
cagctaaattatacacttgccaacttgatgccatcccaccatacttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataatta |
370 |
Q |
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| T |
14261 |
cagctaaattatacacttgccaacttgataccatcccaccatacttgatccacttgcacttcaggtacactgccaa-cttgaaatattaaataataatta |
14163 |
T |
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| Q |
371 |
gtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaa |
470 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
14162 |
gtattacaattatttggtattggattctctttgacgaaatctaggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaa |
14063 |
T |
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| Q |
471 |
nnnnnnnnnnnnnnnnnnnnatggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgac |
570 |
Q |
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| T |
14062 |
-ttttgtttttttccttttcatggccatgtgccttcacaacttgttttttcctactgtcattcactaattatttatttttctatagcagccaat------ |
13970 |
T |
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| Q |
571 |
atgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataaca |
628 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13969 |
---ttggagaagaactacatccactgatttaatatataatctttgaaaacaaataaca |
13915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 14339 - 14269
Alignment:
| Q |
155 |
ttaaaagttgaggttctgtctagagtattaaagaaagacgccaagcaaggatatatacctattattttgagataa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
14339 |
ttaaaagttgaggttctgtctagagtattaaagaaagacgccaagaaagg----atacctattattttgagataa |
14269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 313 - 628
Target Start/End: Complemental strand, 10497 - 10187
Alignment:
| Q |
313 |
acttgatccacttgaacttcaggtacactgccaaacttgaaatattaaataataattagtattacaattatttggtattggattctctttgatgaaatct |
412 |
Q |
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||||| |||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10497 |
acttgctccacttgcacttgaggtacactgccaa-cttgaaatattaaataat---tagtattacaattatatggtattggattctctttgatgaaatct |
10402 |
T |
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| Q |
413 |
aggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnnnnnnnnnatggccatgtgccttcacagct |
512 |
Q |
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| T |
10401 |
aggccacacaagaacaaatgaacgggcatgatgttgttacataagataagttttccaa-ttttttttttttccttttcatggccatgtgccttcacaact |
10303 |
T |
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| Q |
513 |
tgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatct |
612 |
Q |
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| T |
10302 |
tgttttttgccactgtcattcactaattatttaattttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatct |
10203 |
T |
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| Q |
613 |
ttgaaaacaaataaca |
628 |
Q |
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|||||||||||||||| |
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| T |
10202 |
ttgaaaacaaataaca |
10187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 10628 - 10564
Alignment:
| Q |
168 |
ttctgtctagagtattaaagaaagacgccaagcaaggatatatacctattattttgagataaacaatag |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
10628 |
ttctgtctagagtattaaagaaagacgccaagaaagg----atacctattattttgagataaacaatag |
10564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 10763 - 10721
Alignment:
| Q |
23 |
tttgtgcttaacattgcatttgcttcacaaactcactatcatc |
65 |
Q |
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| T |
10763 |
tttgtgcttaacattgcatttgcttcacatactcactatcatc |
10721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 10547 - 10492
Alignment:
| Q |
232 |
aatagatatagatgaaatttcatattccagaccaaacagcagctaaattatacacttgc |
290 |
Q |
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| T |
10547 |
aatagatatagttgaaatttcatattcctgaccaaa---cagctaaattatacacttgc |
10492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 540 - 628
Target Start/End: Complemental strand, 16782253 - 16782165
Alignment:
| Q |
540 |
tatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataaca |
628 |
Q |
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||||| ||||||||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16782253 |
tatttttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataaca |
16782165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 430
Target Start/End: Original strand, 16875998 - 16876065
Alignment:
| Q |
363 |
aataattagtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaa |
430 |
Q |
| |
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|||||||||||||| |||||||| | |||||||||| | |||||||||||||||||||||||||| |
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| T |
16875998 |
aataattagtattaatattatttgtgactggattctctccggtgaaatctaggccacacaagaacaaa |
16876065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 16782985 - 16782917
Alignment:
| Q |
363 |
aataattagtattacaattatttggtattggattctctttgatgaaatctaggccacacaagaacaaat |
431 |
Q |
| |
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||||||||||||||| |||||||| | |||||||||| || |||| |||||| ||| | ||||||||| |
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| T |
16782985 |
aataattagtattactattatttgtgactggattctctctggtgaagtctaggtcaccctagaacaaat |
16782917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 550 - 627
Target Start/End: Original strand, 38938380 - 38938457
Alignment:
| Q |
550 |
tctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataac |
627 |
Q |
| |
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|||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
38938380 |
tctacagcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataac |
38938457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 604
Target Start/End: Original strand, 11983042 - 11983111
Alignment:
| Q |
533 |
cactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaata |
604 |
Q |
| |
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|||||||||||| || ||||||| |||||| ||||| ||||||| |||||| ||||||||||||||||| |
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| T |
11983042 |
cactaattattt--ttgtctataggagccaactttgaatagttgcaggagaactgcatccactgatttaata |
11983111 |
T |
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