View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_5 (Length: 475)
Name: NF16431_low_5
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_5 |
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| [»] scaffold0188 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 50981386 - 50981830
Alignment:
| Q |
19 |
caacctcataataatatttagtgttgtactccaaattccttatagtagtgtgatgaataaaaccagatgagtaattgaagaatctataggtaacaatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50981386 |
caacctcataataatatttagtgttgtactccaaattccttatagtagtgtgatgaataaaaccagatgagtaattgaagaatctataagtaacaatttt |
50981485 |
T |
|
| Q |
119 |
ccctttagctatcttcttttgtttgctgttgtcagtactccagtagcgcactgcgatcgaccctggttcatcctcggtcacccacgatacgatcacttct |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981486 |
ccctttagctagcttcttttgtttgctgttgtcagtactccagtagcgcactgcgatcgaccctggttcatcctcggtcacccacgatacgatcacttct |
50981585 |
T |
|
| Q |
219 |
ttcccaacaagatcaccttgtgtaatatgaacctgttggggagcattataaccagaaggaacagcaaaaacatcactatcaagtgacatattaacgcctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981586 |
ttcccaacaagatcaccttgtgtaatatgaacctgttggggagcattataaccagaaggaacagcaaaaacatcactatcaagtgacatattaacgcctt |
50981685 |
T |
|
| Q |
319 |
tctgaacattcctaacaaaagcactggttgtgcctccattacacaccgacactaaattcaaaactaaagctagtggtaataaaaaactagcaattgaaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981686 |
tctgaacattcctaacaaaagcactggttgtgcctccattacacacagacactaaattcaaaactaaagctagtggtaataaaaaactagcaattgaaat |
50981785 |
T |
|
| Q |
419 |
acccatttgttttctctcaaactcacagaccctaatgattgagaa |
463 |
Q |
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| T |
50981786 |
acccatttgttttctctcaaactcacagaccctaatgattgagaa |
50981830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 404
Target Start/End: Original strand, 50965377 - 50965587
Alignment:
| Q |
195 |
gtcacccacgatacgatcacttctttcccaacaagatcaccttgtgtaatatgaacctgttggggagcattataaccagaa-ggaacagcaaaaacatca |
293 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||| || |||||||||| | ||||||| |||||||||||| |||||| ||| ||||| |
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| T |
50965377 |
gtcacacacgatacgatcacggctttcccaacaagatcacct---gttatatgaacctatcggggagccttataaccagaatggaacaataaacacatcg |
50965473 |
T |
|
| Q |
294 |
ctatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttgtgcctccattacacaccgacactaaattcaaaactaaagc---ta |
390 |
Q |
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|||||||| |||||||||||||| || | || || |||||||||| ||| ||| | |||||||| ||||| |||| ||||||||||| ||||| || |
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| T |
50965474 |
ctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctccattgcacacaaacaccaaattcaaaaccaaagctagta |
50965573 |
T |
|
| Q |
391 |
gtggtaataaaaaa |
404 |
Q |
| |
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|||||||||||||| |
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|
| T |
50965574 |
gtggtaataaaaaa |
50965587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 51 - 252
Target Start/End: Complemental strand, 13638029 - 13637831
Alignment:
| Q |
51 |
aaattccttatagtagtgtgatgaataaaaccagatgagtaattgaagaatctataggtaacaattttccctttagctatcttcttttgtttgctgttgt |
150 |
Q |
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|||||||| |||||||||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||||||||||| | |||| || |||||||| | |
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| T |
13638029 |
aaattcctaatagtagtgtgatggataaaaccagaagtgtaattgaaaaatctataagtaacaattttccctttagctagcctcttctgcttgctgttct |
13637930 |
T |
|
| Q |
151 |
cagtactccagtagcgcactgcgatcgaccctggttcatcctcggtcacccacgatacgatcacttctttcccaacaagatcaccttgtgtaatatgaac |
250 |
Q |
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|||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||| |
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| T |
13637929 |
---tactccagtaacgcactgcgttcgagcctggttcatcctcagtcacccacgatacgatcactgctttccccacatgatcaccttgtgttatatgaac |
13637833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 249 - 382
Target Start/End: Complemental strand, 13636692 - 13636559
Alignment:
| Q |
249 |
acctgttggggagcattataaccagaaggaacagcaaaaacatcactatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || | |||| ||| ||||||||||||| ||| ||| |
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| T |
13636692 |
acctgttggggagcattataaccagaaggaacatcaaaaacatcactatcaagtggcatatcaatggtcttctcaactttcctaacaaaagtactagttc |
13636593 |
T |
|
| Q |
349 |
tgcctccattacacaccgacactaaattcaaaac |
382 |
Q |
| |
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|||||||||||||||| |||| ||||||||||| |
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| T |
13636592 |
tgcctccattacacacaaacaccaaattcaaaac |
13636559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 50 - 252
Target Start/End: Complemental strand, 9202 - 9003
Alignment:
| Q |
50 |
caaattccttatagtagtgtgatgaataaaaccagatgagtaattgaagaatctataggtaacaattttccctttagctatcttcttttgtttgctgttg |
149 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||| | |||||| || |||||||| |
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|
| T |
9202 |
caaattccttatagtaacatgatgaataaaaccagatgagtaattgaagtatctataagtttcaatttttcctttagcaagcttcttgtgcttgctgttc |
9103 |
T |
|
| Q |
150 |
tcagtactccagtagcgcactgcgatcgaccctggttcatcctcggtcacccacgatacgatcacttctttcccaacaagatcaccttgtgtaatatgaa |
249 |
Q |
| |
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||| |||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||| ||| |||| |||||||| ||||||| |
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| T |
9102 |
tca---ctccagtaacgcactgcatccgacccgggttcatcctcagtcacccacgatacgatcactgctttccccacatgatcgccttgtgttatatgaa |
9006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 400
Target Start/End: Complemental strand, 8364 - 8213
Alignment:
| Q |
249 |
acctgttggggagcattataaccagaaggaacagcaaaaacatcactatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttg |
348 |
Q |
| |
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|||||||| |||||||||||||||| ||||| ||||||||| |||||||||| ||||| || || |||| ||| |||||||||||| ||| || | |
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| T |
8364 |
acctgttgaggagcattataaccaggtggaaccctaaaaacatcgctatcaagtggcatatcaatgctcttctcaaccttcctaacaaaaatacttgtgg |
8265 |
T |
|
| Q |
349 |
tgcctccattacacaccgacactaaattcaaaactaaagctagtggtaataa |
400 |
Q |
| |
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| |||||||||||| |||| ||||||||||| ||| |||||| |||||| |
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|
| T |
8264 |
aacttccattacacacaaacaccaaattcaaaaccaaacctagtgataataa |
8213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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