View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16431_low_7 (Length: 458)
Name: NF16431_low_7
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16431_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 928464 - 928079
Alignment:
| Q |
1 |
atcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcacacctgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928464 |
atcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcacacctgaag |
928365 |
T |
|
| Q |
101 |
ataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928364 |
ataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggggtaaagggattgtcacatgtgctgtgaaacaaattgttaagat |
928265 |
T |
|
| Q |
201 |
tgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928264 |
tgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaag |
928165 |
T |
|
| Q |
301 |
gagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttagtgttctttctaatgatctccaact |
386 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928164 |
gagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttagtgttctttctaatgatctccaact |
928079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 939389 - 938998
Alignment:
| Q |
1 |
atcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgt--tca----cac |
94 |
Q |
| |
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|||| |||||| |||| |||| || ||||||||| || ||||||||||||||| |||| |||||||||||||| ||||| | || ||| ||| |
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| T |
939389 |
atcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgctattggccgtgtttctctgaaatcaagatcac |
939290 |
T |
|
| Q |
95 |
ctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgt |
194 |
Q |
| |
|
|| | |||||||||||||| || |||||||||||| |||| |||| ||||||||| ||| ||||||| || | ||| | || |||||||||| | || |
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| T |
939289 |
ctcatgataaaagcaggaacaaaactgcagaacttgcctatgttctagcctctaaatactggggtaaaggaatagccacgtatgttgtgaaacaagtagt |
939190 |
T |
|
| Q |
195 |
taagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttc |
294 |
Q |
| |
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|||| |||||||| ||| || || |||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
939189 |
taaggttgcattcagtgagttgtcacacttggaaagagttgaagcttttgttgatgtggaaaatgttggatctcaaagggttttggagaaagctggtttc |
939090 |
T |
|
| Q |
295 |
caaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttagtgttctttctaatgatctccaact |
386 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||| |
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| T |
939089 |
caaaaggagggaactcttgggaagtatttggtcatgaaaggaaaaagcagagatatgattattttcagtgttctttctactgatctccaact |
938998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 924109 - 923718
Alignment:
| Q |
1 |
atcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------ac |
94 |
Q |
| |
|
||||||||||| |||| ||| | | ||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||| | | | | | || |
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|
| T |
924109 |
atcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcac |
924010 |
T |
|
| Q |
95 |
ctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgt |
194 |
Q |
| |
|
||| |||||| |||||| ||| |||||||||||||||| |||| |||||||||||||| |||||||| ||| ||| |||| |||||||||| | || |
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|
| T |
924009 |
ctggtgataaatccaggaacaaatgtgcagaacttggctatgttctaggctctaaatattggggtaaaggggttgccacttgtgttgtgaaacaagtggt |
923910 |
T |
|
| Q |
195 |
taagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttc |
294 |
Q |
| |
|
|||| |||||||| ||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
923909 |
taaggttgcattctgtgagttgtcttacttggaaaggcttgaagctcttgttgatgtggaaaatgctgggtctcaaagagttttggagaaagctggtttc |
923810 |
T |
|
| Q |
295 |
caaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttagtgttctttctaatgatctccaact |
386 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| | || ||||| |||||| |
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| T |
923809 |
caaaaagagggagttcttaggaaatatttggtcatgaaaggaaaaagtagagatatgatcatctccagtgttctctttactgatccccaact |
923718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 144 - 386
Target Start/End: Complemental strand, 935451 - 935209
Alignment:
| Q |
144 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctctt |
243 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||||||| |||||||| |
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| T |
935451 |
ctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttgcattcagtgaatttcaatccttggaaaggcttcaagctctt |
935352 |
T |
|
| Q |
244 |
gttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagca |
343 |
Q |
| |
|
|||||| |||| ||||||||||| |||| || | ||||||| |||||| ||||| ||||| ||||||||||||| | || | ||||||||||||| |
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|
| T |
935351 |
gttgatatggataatgttgggtcgcaaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagca |
935252 |
T |
|
| Q |
344 |
gagatatgatcatgtttagtgttctttctaatgatctccaact |
386 |
Q |
| |
|
|||||||||||||||| ||| |||||| || |||||| ||||| |
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|
| T |
935251 |
gagatatgatcatgttcagtcttctttttactgatcttcaact |
935209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 144 - 378
Target Start/End: Complemental strand, 925995 - 925755
Alignment:
| Q |
144 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagatt------gcattcgatgaattttcgtacttggaaaggcttgaa |
237 |
Q |
| |
|
||||||||| ||| |||||||||||| ||| ||||||||||||||||| |||| | || |||||| ||||||||| || ||||||||||||||| |
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|
| T |
925995 |
ctctaaatactggggtaaagggattgccacgtgtgctgtgaaacaaatggttatggttacatttgcattcagtgaattttcatatttggaaaggcttgaa |
925896 |
T |
|
| Q |
238 |
gctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaa |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| || | || |||| |||||| ||||| |||||| |||||| |||||| | || | ||||||| |
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| T |
925895 |
gctcttgttgatgtggataatgttgggtcacaaagagtacttgaaaaagttggttttcaaaaagagggagttcttagaaagtatgtattctttaaaggaa |
925796 |
T |
|
| Q |
338 |
aaagcagagatatgatcatgtttagtgttctttctaatgat |
378 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
925795 |
aaagcagagatatgatcatgttcagtcttctttctactgat |
925755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 940404 - 940075
Alignment:
| Q |
18 |
tatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------acctgaagataaaagcagg |
111 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||| || || ||| ||||||| | |||| | ||| || ||||| |
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|
| T |
940404 |
tatagaaagcaagtatctatgttgcaaaacaatatgcctcaatgatcgtactatcgggtgagttattttgttttcgagattacct-acgatgaatgcagg |
940306 |
T |
|
| Q |
112 |
aaacaatctgcagaacttggctataatctaagctctaaatattgg-tgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgat |
210 |
Q |
| |
|
|| ||| || ||||||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||| | |||||| |||||||| | |
|
|
| T |
940305 |
aacaaatgtgtagaacttggctatgttctaggctataaatattgggtgtaaagggatttccacatgtgctgtgaaacaagtagttaaggttgcattcagt |
940206 |
T |
|
| Q |
211 |
gaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactc |
310 |
Q |
| |
|
|| ||| | || |||||||||||||| ||| | ||||||||||| |||||||||| || || ||||||||||||||||||||||||| ||| | |
|
|
| T |
940205 |
gagtttccacacatggaaaggcttgaa--tctattagatgtggaaaacgttgggtctctgagagtgctggagaaagctggtttccaaaaggaaggagtac |
940108 |
T |
|
| Q |
311 |
ttaggaagtatttggtcatgaaaggaaaaagca |
343 |
Q |
| |
|
| || |||||| || ||||||||| ||||||| |
|
|
| T |
940107 |
tcagaaagtatctgaacatgaaagggaaaagca |
940075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 928013 - 927958
Alignment:
| Q |
380 |
tccaactttaataagtttcatttttcaatcataattttcttttaatattgaaatct |
435 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928013 |
tccaactttaatacgtttcatttttcaatcataattttcttttaatattgaaatct |
927958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 46648277 - 46648079
Alignment:
| Q |
107 |
gcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcatt |
206 |
Q |
| |
|
||||||| ||||||| |||||||||||| | | ||||| || |||||| | |||||||||| |||| || ||| |||||| | ||| | |||||| |
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|
| T |
46648277 |
gcaggaacaaatctgctgaacttggctatgctatgagctccaagtattggggcaaagggattgccacacttgttgtcaaacaagtggttgaagctgcatt |
46648178 |
T |
|
| Q |
207 |
cgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
305 |
Q |
| |
|
| || ||| | |||||||||||||||||||||| ||||||||||||||| | | ||||| || || |||||||| |||||||| |||| |||||| |
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|
| T |
46648177 |
taaggagtttccatacttggaaaggcttgaagctcaagttgatgtggaaaatatggcttctcagagagtattggagaaggctggttttcaaagggaggg |
46648079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 46656492 - 46656419
Alignment:
| Q |
220 |
tacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggttt |
293 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||| | ||||||||||| |||||||| |||||||| |
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|
| T |
46656492 |
tacttggagaggcttgaggctcgagttgatgtggaaaatgtggcttctcaaagggtgttggagaaggctggttt |
46656419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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