View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16431_low_8 (Length: 454)

Name: NF16431_low_8
Description: NF16431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16431_low_8
NF16431_low_8
[»] chr2 (3 HSPs)
chr2 (150-267)||(21627544-21627660)
chr2 (151-267)||(32791393-32791508)
chr2 (167-267)||(236144-236243)
[»] chr6 (6 HSPs)
chr6 (141-293)||(17006901-17007039)
chr6 (161-256)||(16579892-16579986)
chr6 (161-256)||(16615394-16615488)
chr6 (24-141)||(17006719-17006842)
chr6 (159-257)||(16571320-16571417)
chr6 (150-195)||(16873265-16873310)
[»] scaffold0256 (2 HSPs)
scaffold0256 (150-260)||(12294-12403)
scaffold0256 (150-267)||(14639-14762)
[»] chr1 (1 HSPs)
chr1 (167-267)||(7389562-7389661)
[»] chr7 (1 HSPs)
chr7 (205-266)||(48300607-48300668)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 21627660 - 21627544
Alignment:
Q  150 gtcctcctgttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaa 249  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  21627660 gtcctactgttctccggctcagccaatgttctcattgcatcgtaaacct-cttgaggtttgtagtaaatgagttcaaccctaatcaaggcaaccttagaa 21627562  T
Q  250 gaacctttgaagtctcca 267  Q
    ||||||||||| ||||||    
T  21627561 gaacctttgaaatctcca 21627544  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 32791508 - 32791393
Alignment:
Q  151 tcctcctgttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaag 250  Q
    |||| ||||||||| ||||||| ||||||||||||| |||||||| || || || |||||||| |||||| |||||||||||||||| ||||||||||||    
T  32791508 tcctgctgttctccagctcagctaatgttctcattgtatcgtaaacct-cttgaagtttgtaggaaatgagttcaaccctcatcaaggcaaccttagaag 32791410  T
Q  251 aacctttgaagtctcca 267  Q
    || ||||||| ||||||    
T  32791409 aaactttgaaatctcca 32791393  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 236144 - 236243
Alignment:
Q  167 ctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaacctttgaagtctcc 266  Q
    |||||||||| ||||| |||| ||||||| ||  | | || ||||||||||||| |||||||||| ||||| | |||||||||||| ||||||| |||||    
T  236144 ctcagccaattttctcgttgcttcgtaaacctcat-gtggcttgtagtaaatgagttcaaccctcttcaaggccaccttagaagaagctttgaaatctcc 236242  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 17006901 - 17007039
Alignment:
Q  141 gccattacagtcctcctgttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagaca 240  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||| | ||||||||| ||||||||||||||||||||          
T  17006901 gccattacggtcctgctgttctccggctcagcca-tgttctcattgcgtcgtaaaacctcttggggtttgtaggaaatgaattcaaccctcatc------ 17006993  T
Q  241 accttagaagaacctttgaagtctccaccttagcaatctaacacaacaaaatt 293  Q
    ||||||        |||||||||| ||||||||||||||||||||||||||||    
T  17006994 acctta-------atttgaagtctacaccttagcaatctaacacaacaaaatt 17007039  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 16579986 - 16579892
Alignment:
Q  161 ctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaacctt 256  Q
    |||||||||| |||||||| |||||||||| |||| || || |||||||||||||||||| |||||||||||||||| |||||||  |||||||||    
T  16579986 ctccggctcaaccaatgttgtcattgcatcataaacct-cttgaggtttgtagtaaatgagttcaaccctcatcaaggcaacctttaaagaacctt 16579892  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 16615394 - 16615488
Alignment:
Q  161 ctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaacctt 256  Q
    |||||||||| |||||||| |||||||||| |||| || || |||||||||||||||||| |||||||||||||||| |||||||  |||||||||    
T  16615394 ctccggctcaaccaatgttgtcattgcatcataaacct-cttgaggtttgtagtaaatgagttcaaccctcatcaaggcaacctttaaagaacctt 16615488  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 17006719 - 17006842
Alignment:
Q  24 aacatgcacttgaccataataagtacacatttgaaaaaagatggatttattaccaatc-------cttttcctgataacaattccgtgcaactcagttag 116  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||  ||       |||||| |||||| |||||| ||||||||||||||    
T  17006719 aacatgcacttgaccgtaataagtacacatttgaataaagatggatttactacctgtccttgaatcttttcatgataa-aattccttgcaactcagttag 17006817  T
Q  117 cgcgcttttcatgaagagcgtagtg 141  Q
    ||| ||  |||||||||||||||||    
T  17006818 cgcactcgtcatgaagagcgtagtg 17006842  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 16571417 - 16571320
Alignment:
Q  159 ttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaaccttt 257  Q
    |||||||| ||||||||||||||||||||  | |||| || || |||||||||||||||||| ||||||||||  |||| |||| ||||||||||||||    
T  16571417 ttctccgggtcagccaatgttctcattgccacttaaacct-cttgaggtttgtagtaaatgagttcaaccctcgacaaggcaacattagaagaaccttt 16571320  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 16873310 - 16873265
Alignment:
Q  150 gtcctcctgttctccggctcagccaatgttctcattgcatcgtaaa 195  Q
    ||||| ||||||||||||||| |||||||||||| |||||| ||||    
T  16873310 gtcctgctgttctccggctcaaccaatgttctcaatgcatcataaa 16873265  T

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Target: scaffold0256 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 12294 - 12403
Alignment:
Q  150 gtcctcctgttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaa 249  Q
    ||||| ||||||||||| |||||||||||||||||||| || |||| || || ||| |||||||||||||| ||||||||||  |||| |||| ||||||    
T  12294 gtcctgctgttctccgggtcagccaatgttctcattgcctcttaaacct-cttgagatttgtagtaaatgagttcaaccctcgacaaggcaacattagaa 12392  T
Q  250 gaacctttgaa 260  Q
    |||||||||||    
T  12393 gaacctttgaa 12403  T

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Target: scaffold0256; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 14639 - 14762
Alignment:
Q  150 gtcctcctgttctccggctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaat-------tcaaccctcatcaagacaac 242  Q
    ||||| || ||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||||||| |       |||||| |||||||||||||    
T  14639 gtcctgctattctccggctcagccaatgttctaattgcctcgt-aaacatcttgaggtttgtagtaaatgagttcaaccatcaaccttcatcaagacaac 14737  T
Q  243 cttagaagaacctttgaagtctcca 267  Q
    |||||||||||||||||| ||||||    
T  14738 cttagaagaacctttgaaatctcca 14762  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 7389661 - 7389562
Alignment:
Q  167 ctcagccaatgttctcattgcatcgtaaaacttctcgaggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaacctttgaagtctcc 266  Q
    |||||||||| ||||| |||| ||||||| ||  | | |||||||||||||||| |||||||||| ||||| | |||||||||||| ||||||| |||||    
T  7389661 ctcagccaattttctcgttgcttcgtaaacctcat-gtggtttgtagtaaatgagttcaaccctcttcaaggctaccttagaagaagctttgaaatctcc 7389563  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 48300607 - 48300668
Alignment:
Q  205 ggtttgtagtaaatgaattcaaccctcatcaagacaaccttagaagaacctttgaagtctcc 266  Q
    |||||||||||||||| |||||||||| ||||| | |||||||||||| ||||||| |||||    
T  48300607 ggtttgtagtaaatgagttcaaccctcttcaaggccaccttagaagaagctttgaaatctcc 48300668  T

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