View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16432_high_1 (Length: 631)

Name: NF16432_high_1
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16432_high_1
NF16432_high_1
[»] chr2 (11 HSPs)
chr2 (15-617)||(40512088-40512669)
chr2 (45-617)||(40481444-40481995)
chr2 (470-532)||(17952771-17952833)
chr2 (470-532)||(31740029-31740092)
chr2 (471-542)||(43808515-43808586)
chr2 (524-578)||(17443556-17443610)
chr2 (478-547)||(14209223-14209292)
chr2 (496-536)||(3458621-3458661)
chr2 (532-572)||(15171407-15171447)
chr2 (496-532)||(29429827-29429863)
chr2 (444-520)||(31461350-31461426)
[»] chr4 (13 HSPs)
chr4 (15-136)||(21612599-21612720)
chr4 (470-531)||(32724057-32724118)
chr4 (436-532)||(24443942-24444038)
chr4 (457-532)||(54325107-54325182)
chr4 (470-524)||(47970256-47970310)
chr4 (528-596)||(34398614-34398682)
chr4 (450-524)||(4191657-4191732)
chr4 (470-532)||(6364087-6364149)
chr4 (470-532)||(21593082-21593143)
chr4 (478-524)||(39063720-39063766)
chr4 (471-517)||(51044544-51044590)
chr4 (457-529)||(36734818-36734890)
chr4 (496-524)||(49085953-49085981)
[»] chr1 (15 HSPs)
chr1 (471-532)||(48830146-48830207)
chr1 (457-530)||(45107548-45107620)
chr1 (471-518)||(43420020-43420067)
chr1 (470-508)||(7244751-7244789)
chr1 (470-532)||(43372029-43372091)
chr1 (472-522)||(43420198-43420248)
chr1 (470-532)||(52286616-52286678)
chr1 (471-532)||(4256112-4256173)
chr1 (473-522)||(9507080-9507129)
chr1 (471-532)||(15360833-15360894)
chr1 (475-532)||(32958595-32958652)
chr1 (470-522)||(4699692-4699744)
chr1 (457-517)||(23895261-23895321)
chr1 (461-517)||(43029486-43029542)
chr1 (470-514)||(50319230-50319274)
[»] scaffold0590 (1 HSPs)
scaffold0590 (443-531)||(1145-1233)
[»] scaffold0275 (1 HSPs)
scaffold0275 (443-531)||(2742-2830)
[»] chr3 (13 HSPs)
chr3 (457-533)||(27792797-27792873)
chr3 (472-532)||(1395611-1395671)
chr3 (470-542)||(53736173-53736245)
chr3 (530-596)||(22667477-22667543)
chr3 (530-596)||(22724116-22724182)
chr3 (470-530)||(42744984-42745044)
chr3 (476-532)||(49586986-49587042)
chr3 (457-532)||(41028921-41028996)
chr3 (470-524)||(40122830-40122884)
chr3 (529-566)||(27016409-27016446)
chr3 (471-532)||(32703077-32703138)
chr3 (532-568)||(32663714-32663750)
chr3 (524-584)||(54775195-54775255)
[»] chr5 (12 HSPs)
chr5 (471-532)||(35135732-35135793)
chr5 (470-530)||(37063146-37063206)
chr5 (470-524)||(7096205-7096259)
chr5 (416-508)||(26516181-26516274)
chr5 (471-542)||(3237039-3237110)
chr5 (524-570)||(32190959-32191005)
chr5 (505-542)||(32197700-32197737)
chr5 (471-524)||(40097148-40097201)
chr5 (496-532)||(985597-985633)
chr5 (525-569)||(13264062-13264106)
chr5 (480-532)||(14295454-14295506)
chr5 (472-532)||(36796776-36796836)
[»] chr8 (8 HSPs)
chr8 (436-532)||(35869741-35869837)
chr8 (470-524)||(12224977-12225031)
chr8 (470-523)||(26215434-26215487)
chr8 (470-532)||(1112791-1112853)
chr8 (470-532)||(29973019-29973081)
chr8 (471-532)||(13410265-13410326)
chr8 (467-524)||(14949823-14949880)
chr8 (407-529)||(2107402-2107522)
[»] chr6 (9 HSPs)
chr6 (457-532)||(10452430-10452505)
chr6 (470-542)||(2034499-2034570)
chr6 (524-584)||(5329041-5329101)
chr6 (470-530)||(33068633-33068693)
chr6 (478-532)||(1402942-1402996)
chr6 (448-530)||(27889916-27889997)
chr6 (470-532)||(29274299-29274361)
chr6 (470-518)||(2514640-2514688)
chr6 (467-507)||(12631547-12631587)
[»] chr7 (10 HSPs)
chr7 (470-532)||(31002699-31002761)
chr7 (470-532)||(33894561-33894622)
chr7 (476-523)||(5715117-5715164)
chr7 (472-530)||(5006581-5006639)
chr7 (525-595)||(8094375-8094445)
chr7 (526-595)||(13960655-13960723)
chr7 (471-532)||(49060479-49060540)
chr7 (470-506)||(3610836-3610872)
chr7 (470-530)||(35536045-35536105)
chr7 (470-530)||(45593791-45593851)


Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 15 - 617
Target Start/End: Original strand, 40512088 - 40512669
Alignment:
Q  15 cagagacaatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512088 cagagacaatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtg 40512187  T
Q  115 aacataaatttgtgacattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512188 aacataaatttgtgacattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctc 40512287  T
Q  215 catattgcacacacttttccaacatgcttcttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatatataagtatggtattt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40512288 catattgcacacacttttccaacatgcttcttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtattt 40512387  T
Q  315 caatttttctgtattaaatttctatgatgactttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaa 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512388 caatttttctgtattacatttctatgatgactttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaa 40512487  T
Q  415 atttggataagcaggttaattagcgctcatagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaa 514  Q
    |||||||||||||||||||||||||||||||| ||||||||                     ||||||||||||||||||||||||||||||||||||||    
T  40512488 atttggataagcaggttaattagcgctcataggttaagcgt---------------------ataagctatttctactacgaaagataaaataatgtcaa 40512566  T
Q  515 actattttcacataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagctataatacaaatgtttct 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512567 actattttcacataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagctataatacaaatgtttct 40512666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 45 - 617
Target Start/End: Original strand, 40481444 - 40481995
Alignment:
Q  45 ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481444 ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa 40481543  T
Q  145 accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481544 accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc 40481643  T
Q  245 ttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatatataagtatggtatttcaatttttctgtattaaatttctatgatga 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  40481644 ttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtatttcaatttttctgtattacatttctatgatga 40481743  T
Q  345 ctttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttggataagcaggttaattagcgctcat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481744 ctttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttggataagcaggttaattagcgctcat 40481843  T
Q  445 agcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataaac 544  Q
    || ||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481844 aggttaagcgt---------------------ataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataaac 40481922  T
Q  545 tctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagctataatacaaatgtttctctt 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40481923 tctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagctataatacaaatgtttctctt 40481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 17952833 - 17952771
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||| |||||||||||||||  || ||||||||||||| ||||||||||||||| |||||||    
T  17952833 cttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 31740092 - 31740029
Alignment:
Q  470 cttatgtataa-gctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||| |||||||    
T  31740092 cttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 43808515 - 43808586
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataa 542  Q
    ||||||||||||||||| |  ||  ||| ||||||||| || |||||||||||| |||||||||||| ||||    
T  43808515 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataa 43808586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 17443610 - 17443556
Alignment:
Q  524 acataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagt 578  Q
    |||| ||||||||||||||||||||  ||| ||||||||||||| ||||| ||||    
T  17443610 acatgagctgtttccataaactcttccaaacagtctcacaagtgcttatatcagt 17443556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 547
Target Start/End: Original strand, 14209223 - 14209292
Alignment:
Q  478 taagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataaactct 547  Q
    ||||||||||| |  || |||||||||||||  ||||||| |||||| ||||||| ||||||||| ||||    
T  14209223 taagctatttcaataacaaaagataaaataaattcaaactgttttcatataagctatttccataagctct 14209292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 3458621 - 3458661
Alignment:
Q  496 aaagataaaataatgtcaaactattttcacataagctgttt 536  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  3458621 aaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 15171407 - 15171447
Alignment:
Q  532 tgtttccataaactctttgaaatagtctcacaagtgtttat 572  Q
    |||||||||||||||||||||| |||||| ||| |||||||    
T  15171407 tgtttccataaactctttgaaagagtctcgcaaatgtttat 15171447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 29429863 - 29429827
Alignment:
Q  496 aaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  29429863 aaagataaaataaagtcaaactgttttcacataagct 29429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 31461350 - 31461426
Alignment:
Q  444 tagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactatt 520  Q
    |||| ||| ||||||||||||  ||  |||| |||||||||||||||  || ||||||||||||| |||||| ||||    
T  31461350 tagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaattatt 31461426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 21612720 - 21612599
Alignment:
Q  15 cagagacaatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtg 114  Q
    ||||||||| ||||||||||||| |||||||  || | |||||||||||| ||||  |||||| |||||||||||||| ||||||||   | ||||||||    
T  21612720 cagagacaaaagaagtacttattaaagaatgcagaggttgtaactttggatgtcactgcatcaccatatataccaaactgataaaagagagaatttggtg 21612621  T
Q  115 aacataaatttgtgacattact 136  Q
    | ||||||||||||||||||||    
T  21612620 agcataaatttgtgacattact 21612599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 32724057 - 32724118
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagc 531  Q
    ||||||| ||| ||||||||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  32724057 cttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 24443942 - 24444038
Alignment:
Q  436 agcgctcatagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||| ||||| |||||   ||||||||  |||||||||||||||| |||||||| || ||| |||||||||  |||||| ||||||| |||||||    
T  24443942 agcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagct 24444038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 532
Target Start/End: Complemental strand, 54325182 - 54325107
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||  || ||| ||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 47970256 - 47970310
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    |||||||||||||||||||||  || ||||||||||| | |||||||||||||||    
T  47970256 cttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 34398682 - 34398614
Alignment:
Q  528 aagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagc 596  Q
    |||||| ||||||||||||| | ||| | |||||||| |||||||  |||||||||| |||||||||||    
T  34398682 aagctgcttccataaactctatcaaacattctcacaaatgtttatgtcagtggataaactcaaataagc 34398614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 524
Target Start/End: Original strand, 4191657 - 4191732
Alignment:
Q  450 aagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagat-aaaataatgtcaaactattttca 524  Q
    |||||| ||||||||  || |||||||||||||||||||||  || |||||| ||||||| |||||||| ||||||    
T  4191657 aagcgtttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttca 4191732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 6364087 - 6364149
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||||||||  || ||||||||||||| || ||| | | ||||||||||||    
T  6364087 cttatgtataagctatttctataacaaaagataaaataaagtgaaattctgttcacataagct 6364149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 21593143 - 21593082
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||| |||||||||  || ||||||||||||| ||| ||||||||||| |||||||    
T  21593143 cttatgtataaactatttctataactaaagataaaataaagtc-aactattttcatataagct 21593082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 524
Target Start/End: Complemental strand, 39063766 - 39063720
Alignment:
Q  478 taagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    ||||||||||||| ||| |||||||||| ||||||||||| ||||||    
T  39063766 taagctatttctattacaaaagataaaacaatgtcaaactgttttca 39063720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 51044590 - 51044544
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaact 517  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||    
T  51044590 ttatgtataagctatttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 36734818 - 36734890
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataa 529  Q
    ||||||||  || ||||||||||| || ||||||  || |||| |||||||| ||||||||||||||| ||||    
T  36734818 tatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 524
Target Start/End: Original strand, 49085953 - 49085981
Alignment:
Q  496 aaagataaaataatgtcaaactattttca 524  Q
    |||||||||||||||||||||||||||||    
T  49085953 aaagataaaataatgtcaaactattttca 49085981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 48830207 - 48830146
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 530
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    ||||||||  || ||||| ||||||||||||||| || |||| ||||||||| ||||||||||||||| |||||    
T  45107548 tatcatataagtgcttatctataagctatttcta-taagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 43420020 - 43420067
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaacta 518  Q
    |||||||||||||||||| |  |||||||||||||||| |||||||||    
T  43420020 ttatgtataagctatttccataacgaaagataaaataaagtcaaacta 43420067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 508
Target Start/End: Complemental strand, 7244789 - 7244751
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataa 508  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  7244789 cttatgtataagctatttctacaccgaaagataaaataa 7244751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 43372091 - 43372029
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||| ||||||||||  || | ||||||||||  |||||| ||||||||||||||||    
T  43372091 cttatgtataggctatttctataacaatagataaaatagagtcaaattattttcacataagct 43372029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 43420198 - 43420248
Alignment:
Q  472 tatgtataagctatttctactacgaaagataaaataatgtcaaactatttt 522  Q
    ||||||||||||||||| |  |||||||||||||||| |||||||| ||||    
T  43420198 tatgtataagctatttccataacgaaagataaaataaagtcaaactttttt 43420248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 52286616 - 52286678
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||| ||||| ||||||||| || ||||||||||||| || |||| ||||||| |||||||    
T  52286616 cttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 4256173 - 4256112
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||||||||||||| || ||||||| ||||| || ||| |||||||  |||||||    
T  4256173 ttatgtataagctatttctacaacaaaagatacaataaagttaaattattttcgtataagct 4256112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 9507129 - 9507080
Alignment:
Q  473 atgtataagctatttctactacgaaagataaaataatgtcaaactatttt 522  Q
    ||||||||||||||||||  || |||| ||||||||||| ||||||||||    
T  9507129 atgtataagctatttctataacaaaagttaaaataatgttaaactatttt 9507080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 15360833 - 15360894
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||| || ||||||||  || ||||||||||||| |||||||| |||||| |||||||    
T  15360833 ttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 32958595 - 32958652
Alignment:
Q  475 gtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||| ||||||  || ||||||||||| | ||||||||||||||| |||||||    
T  32958595 gtataagctctttctatcaccaaagataaaattaagtcaaactattttcagataagct 32958652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 4699744 - 4699692
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactatttt 522  Q
    |||||| ||||||||||||||| ||  ||||| |||||| |||||||||||||    
T  4699744 cttatgaataagctatttctacaacacaagattaaataaagtcaaactatttt 4699692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 23895261 - 23895321
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaact 517  Q
    ||||||||  ||| ||||||||||||||||||||  || |||||||||||||  |||||||    
T  23895261 tatcatataagttattatgtataagctatttctataacaaaagataaaataaattcaaact 23895321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 517
Target Start/End: Complemental strand, 43029542 - 43029486
Alignment:
Q  461 atatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaact 517  Q
    ||||| || ||||||||||| |||||||||| || |||||||||||||  |||||||    
T  43029542 atatgagtgcttatgtataacctatttctacaacaaaagataaaataaattcaaact 43029486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 50319230 - 50319274
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaa 514  Q
    |||||||||||||||||||||  || ||||||||||||| |||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 531
Target Start/End: Complemental strand, 1233 - 1145
Alignment:
Q  443 atagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagc 531  Q
    ||||| ||| ||| ||||||||  || |||||||||||||||||||||  || ||||||||||||| ||||||||||| ||| ||||||    
T  1233 atagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 531
Target Start/End: Original strand, 2742 - 2830
Alignment:
Q  443 atagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagc 531  Q
    ||||| ||| ||| ||||||||  || |||||||||||||||||||||  || ||||||||||||| ||||||||||| ||| ||||||    
T  2742 atagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 533
Target Start/End: Original strand, 27792797 - 27792873
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctg 533  Q
    ||||||||  || ||||||||||||||||||| |  || ||||||||||||| ||||||||||||||| ||||||||    
T  27792797 tatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagctg 27792873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  472 tatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||||||  || ||||||||||||| |||||| |||||||| |||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 53736245 - 53736173
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataa 542  Q
    |||| |||| || ||||||||  || ||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  53736245 cttacgtatgagttatttctataacaaaagataaaataatgtcaaactattttcatataagttgttttcataa 53736173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 22667477 - 22667543
Alignment:
Q  530 gctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagc 596  Q
    |||||||||||||||||| | ||| ||||||||||||| ||||  |||| ||||| |||||||||||    
T  22667477 gctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagc 22667543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 22724116 - 22724182
Alignment:
Q  530 gctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataagc 596  Q
    |||||||||||||||||| | ||| ||||||||||||| ||||  |||| ||||| |||||||||||    
T  22724116 gctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagc 22724182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 42744984 - 42745044
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    ||||||||||| | ||||||||||| |||||||||||||  || |||| ||||||||||||    
T  42744984 cttatgtataatccatttctactacaaaagataaaataaattcgaactgttttcacataag 42745044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 49587042 - 49586986
Alignment:
Q  476 tataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||  || ||||||||||||| |||||||| |||||| |||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagct 49586986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 532
Target Start/End: Complemental strand, 41028996 - 41028921
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||  || |||||||||||||||||||||  || ||||| ||||||| ||||| || |||||| |||||||    
T  41028996 tatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagct 41028921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 40122884 - 40122830
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    ||||||||||||||||||| |  || ||||||||||||| |||||||| ||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttca 40122830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 27016446 - 27016409
Alignment:
Q  529 agctgtttccataaactctttgaaatagtctcacaagt 566  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  27016446 agctgtttccataaactctttgaaacagtctcataagt 27016409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 32703077 - 32703138
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||||||| ||  |||||||||||||  ||||| | |||||| |||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 568
Target Start/End: Original strand, 32663714 - 32663750
Alignment:
Q  532 tgtttccataaactctttgaaatagtctcacaagtgt 568  Q
    |||||||||||||||| | ||||||||||||||||||    
T  32663714 tgtttccataaactctctcaaatagtctcacaagtgt 32663750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 584
Target Start/End: Original strand, 54775195 - 54775255
Alignment:
Q  524 acataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataa 584  Q
    ||||||| | ||||||||||||||  || |||||||| |||||||||||| |||| |||||    
T  54775195 acataagttatttccataaactctcggatatagtctcgcaagtgtttatatcagtagataa 54775255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 35135793 - 35135732
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||| ||||||||  || ||||||||||||| ||||||||||||||| |||||||    
T  35135793 ttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 530
Target Start/End: Complemental strand, 37063206 - 37063146
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    ||||||||||| |||||||||  || ||||||||||||| ||||||||||||||| |||||    
T  37063206 cttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 7096259 - 7096205
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    |||||||||||||||||||||  || ||||||||||||| ||||||| |||||||    
T  7096259 cttatgtataagctatttctataacaaaagataaaataaagtcaaaccattttca 7096205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 508
Target Start/End: Original strand, 26516181 - 26516274
Alignment:
Q  416 tttggataagcaggttaatta-gcgctcatagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataa 508  Q
    ||||||||| ||  ||||||| ||||| ||||| ||||||  ||||||||  || |||||||||||||||||||||  || |||||||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataa 26516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 3237039 - 3237110
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataa 542  Q
    |||| ||||||||||||||| ||| ||||| ||||||   |||||| ||||||| ||||||||||| |||||    
T  3237039 ttatctataagctatttctattacaaaagacaaaatagaatcaaaccattttcatataagctgttttcataa 3237110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 32190959 - 32191005
Alignment:
Q  524 acataagctgtttccataaactctttgaaatagtctcacaagtgttt 570  Q
    |||||||||||||||||||||||||  ||| ||||| ||||||||||    
T  32190959 acataagctgtttccataaactcttccaaacagtctaacaagtgttt 32191005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 32197700 - 32197737
Alignment:
Q  505 ataatgtcaaactattttcacataagctgtttccataa 542  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  32197700 ataaagtcaaactattttcatataagctgtttccataa 32197737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 40097148 - 40097201
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    |||| ||||| |||||||||  || |||||||||||||||||||| ||||||||    
T  40097148 ttatctataaactatttctatcacaaaagataaaataatgtcaaattattttca 40097201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 985597 - 985633
Alignment:
Q  496 aaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  985597 aaagataaaataaagtcaaactgttttcacataagct 985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 569
Target Start/End: Complemental strand, 13264106 - 13264062
Alignment:
Q  525 cataagctgtttccataaactctttgaaatagtctcacaagtgtt 569  Q
    ||||||||||||||||||||||||  ||| |||||| ||||||||    
T  13264106 cataagctgtttccataaactcttccaaacagtctcgcaagtgtt 13264062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 14295454 - 14295506
Alignment:
Q  480 agctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||  || ||||||||||||| |||||||| |||||| |||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagct 14295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 36796836 - 36796776
Alignment:
Q  472 tatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||| ||||||| | || ||| ||||||||| || ||| ||||||||||||||||    
T  36796836 tatgtataagttatttctgcaacaaaaaataaaataaggttaaattattttcacataagct 36796776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 35869741 - 35869837
Alignment:
Q  436 agcgctcatagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||| ||||| |||||   ||||||||  |||||||||||||||| |||||||| || ||| |||||||||  |||||| ||||||| |||||||    
T  35869741 agcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagct 35869837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 12225031 - 12224977
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    |||||||||||| ||||||||  || ||||||||||||| |||||||||||||||    
T  12225031 cttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttca 12224977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 26215434 - 26215487
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttc 523  Q
    |||||||||||||||||||||  || ||||||||||||| || |||||||||||    
T  26215434 cttatgtataagctatttctataacaaaagataaaataaagttaaactattttc 26215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 1112791 - 1112853
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||| ||||||||||  || ||||||||||||| || ||| | ||||||||||||||    
T  1112791 cttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttcacataagct 1112853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 29973019 - 29973081
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||| ||||||||||||||   ||  ||| |||||||| |||||||||||||||||||||||    
T  29973019 cttatatataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagct 29973081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 13410326 - 13410265
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||| ||| || ||| || |||| ||||||||||| |||||||||||| |||||||    
T  13410326 ttatgtataaactacttttacaacaaaagttaaaataatgttaaactattttcatataagct 13410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 14949823 - 14949880
Alignment:
Q  467 gttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttca 524  Q
    |||||||||||||||||| |||||  || ||||||||||||  |||||||| ||||||    
T  14949823 gttcttatgtataagctacttctataacaaaagataaaatagagtcaaactcttttca 14949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 529
Target Start/End: Complemental strand, 2107522 - 2107402
Alignment:
Q  407 taggccaaatttggataagcaggttaatta-gcgctcatagcttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaa 505  Q
    |||||||  ||||||||| ||  ||||||| ||| | |||||||| |||  ||||||||  ||||||||||||||| |||||||||  | ||||||||||    
T  2107522 taggccatttttggataaacaacttaattaagcgtttatagcttatgcgcttatcatataagttcttatgtataagttatttctaccgc-aaagataaaa 2107424  T
Q  506 taatgtcaaactattttcacataa 529  Q
    ||  |||||| | |||||||||||    
T  2107423 ta--gtcaaattgttttcacataa 2107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 532
Target Start/End: Complemental strand, 10452505 - 10452430
Alignment:
Q  457 tatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||  || |||||||||||||||||||||  || ||| |||||||||  |||||||||||||| |||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 2034570 - 2034499
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagctgtttccataa 542  Q
    |||||||||||||| ||| ||| || ||||||||||||| ||||||||| ||||| ||||||| ||| |||||    
T  2034570 cttatgtataagctgtttttacaac-aaagataaaataaagtcaaactactttcatataagcttttttcataa 2034499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 584
Target Start/End: Original strand, 5329041 - 5329101
Alignment:
Q  524 acataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataa 584  Q
    ||||||| | |||||||||||||| ||| |||||||| |||||||||||| |||| |||||    
T  5329041 acataagttatttccataaactctctgatatagtctcgcaagtgtttatatcagtagataa 5329101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 530
Target Start/End: Complemental strand, 33068693 - 33068633
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    |||||||||||| ||||||||  || |||||||||||||| ||||||| |||||| |||||    
T  33068693 cttatgtataagttatttctataacaaaagataaaataatatcaaactgttttcaaataag 33068633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 1402942 - 1402996
Alignment:
Q  478 taagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||  || ||||||||||||| || |||||||||||| |||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 27889997 - 27889916
Alignment:
Q  448 ttaagcgtatatcatatgcgttcttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    |||||| | ||||||||| || |||||||| ||| ||||||||  || | |||||||||||| |||||||||||||| |||||    
T  27889997 ttaagcatttatcatatgagtgcttatgtacaagttatttctataacaacagataaaataat-tcaaactattttcatataag 27889916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 29274361 - 29274299
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||||||||   | ||||||||||||| |||||| | |||||| |||||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 518
Target Start/End: Original strand, 2514640 - 2514688
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaacta 518  Q
    |||||||||||||||||||||  |  ||||||||||||| |||||||||    
T  2514640 cttatgtataagctatttctataataaaagataaaataaagtcaaacta 2514688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 12631547 - 12631587
Alignment:
Q  467 gttcttatgtataagctatttctactacgaaagataaaata 507  Q
    ||||||||||||||||||||||||  || ||||||||||||    
T  12631547 gttcttatgtataagctatttctataaccaaagataaaata 12631587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 31002699 - 31002761
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||| ||||||| || || ||||||||||||| |||||| |||||||| |||||||    
T  31002699 cttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagct 31002761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 33894561 - 33894622
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    |||||||||||||||||||||  || ||||||||||||| |||||||| |||||| |||||||    
T  33894561 cttatgtataagctatttctataacaaaagataaaataa-gtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 523
Target Start/End: Complemental strand, 5715164 - 5715117
Alignment:
Q  476 tataagctatttctactacgaaagataaaataatgtcaaactattttc 523  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||||    
T  5715164 tataagctatttctataacgaaagataaaataaagtcaaacaattttc 5715117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 5006639 - 5006581
Alignment:
Q  472 tatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    ||||||||||||||| |||  || ||||||||||||| |||||||| |||||| |||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataag 5006581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 595
Target Start/End: Original strand, 8094375 - 8094445
Alignment:
Q  525 cataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataag 595  Q
    |||||||||||| |||||| ||| | ||||||||||||||||| ||||   ||| ||||| ||||||||||    
T  8094375 cataagctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 13960723 - 13960655
Alignment:
Q  526 ataagctgtttccataaactctttgaaatagtctcacaagtgtttatagcagtggataatctcaaataag 595  Q
    ||||||||||| ||||| |||| | |||||||||| |||||| |||| ||| ||||||| ||||||||||    
T  13960723 ataagctgttttcataagctctctcaaatagtctcgcaagtgcttat-gcaatggataagctcaaataag 13960655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 49060479 - 49060540
Alignment:
Q  471 ttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataagct 532  Q
    ||||||||||||||||||||  || ||| ||||||||| |||||| |||||| | |||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 3610872 - 3610836
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaat 506  Q
    |||||||||||||||||||||| || |||||||||||    
T  3610872 cttatgtataagctatttctacaacaaaagataaaat 3610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 35536045 - 35536105
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    |||||||||||||||||||||  ||  |||||||||||| |||||| | |||||| |||||    
T  35536045 cttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 530
Target Start/End: Complemental strand, 45593851 - 45593791
Alignment:
Q  470 cttatgtataagctatttctactacgaaagataaaataatgtcaaactattttcacataag 530  Q
    ||||||||||||||||||||   || ||| ||||||||| |||||||| |||||| |||||    
T  45593851 cttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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