View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_high_11 (Length: 380)
Name: NF16432_high_11
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 43376042 - 43376400
Alignment:
| Q |
19 |
gtgagttcgaaggtcaattatcaacgtggttaccttagaacacgtggcgttaagttaaagaaaaggtaaacagtgtcattcccgtgtttttgacaactag |
118 |
Q |
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| T |
43376042 |
gtgagttcgaaggtcaattgtcaacgtggttaccttagaacacgtggcgttaagttaaagaaaaggtaaacagtgtcattcccgtgtttttgacaactag |
43376141 |
T |
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| Q |
119 |
gnnnnnnnnn--------caaattttattcgtttcgattttgcattacattaacgtagagaattctcaaaaacacatttgagtctatttcttgttttgtt |
210 |
Q |
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| T |
43376142 |
aaaaaaaaaaaaaaaaaacaaattttattcgtttcgattttgcattacattaacgtagagaattctcaaaaacacatttgagtctatttcttgttttgtt |
43376241 |
T |
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| Q |
211 |
tcccacagagttaggagttcccgatctaccttaattcccactaatcaatcactgcattctacgtaatcattcttttttaataatttcaaccattgctgtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43376242 |
tcccacagagttaggagttcccgatctaccttaattcccactaatcaatccctgcattctacgtaatcattcttttttaataatttcaaccattgctgtt |
43376341 |
T |
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| Q |
311 |
acaatttcacattcttatcatcacaagtaagaccctccatctccctctctcttattcat |
369 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43376342 |
acaattttacattcttatcatcacaagtaagaccctccatctccctctctcttattcat |
43376400 |
T |
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