View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16432_high_14 (Length: 322)

Name: NF16432_high_14
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16432_high_14
NF16432_high_14
[»] chr6 (3 HSPs)
chr6 (17-313)||(31265306-31265602)
chr6 (16-311)||(22045254-22045550)
chr6 (50-311)||(22357555-22357817)
[»] chr1 (1 HSPs)
chr1 (16-313)||(12780712-12781010)
[»] chr2 (1 HSPs)
chr2 (16-311)||(44355641-44355937)
[»] scaffold0008 (1 HSPs)
scaffold0008 (16-311)||(84178-84476)
[»] chr8 (3 HSPs)
chr8 (16-311)||(2501330-2501626)
chr8 (92-311)||(31395865-31396085)
chr8 (28-311)||(2501926-2502209)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 31265306 - 31265602
Alignment:
Q  17 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265306 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 31265405  T
Q  117 acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265406 acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaata 31265505  T
Q  217 tgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31265506 tgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgttttcttct 31265602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 22045550 - 22045254
Alignment:
Q  16 catcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatg 115  Q
    |||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | ||    
T  22045550 catcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtg 22045451  T
Q  116 aacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaa 214  Q
    | ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| |    
T  22045450 agcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccata 22045351  T
Q  215 tatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
    || | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  22045350 taagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttctt 22045254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 311
Target Start/End: Original strand, 22357555 - 22357817
Alignment:
Q  50 tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca 149  Q
    |||||| |||||||||| | ||||||||||| | | |||| |  |  ||||||||| |  | |||||||||||||| |||| ||| |||||||||||||     
T  22357555 tcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctcatatcatcc 22357654  T
Q  150 tcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccat 248  Q
    ||||||| ||| ||||   ||| ||||| | |||  | | ||| |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||    
T  22357655 tcaaggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccat 22357754  T
Q  249 ctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
    |||||| ||||  |  ||||||||||| ||||||||||| |||||  ||||||||||||||||    
T  22357755 ctctaataccaacttgataatggttaacggcttgaacaaagacattgttttccatgtcttctt 22357817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 12780712 - 12781010
Alignment:
Q  16 catcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatg 115  Q
    |||||||||| ||||   ||||| ||||  ||| |||||||| |||||| | | ||||||||||||||||||||||||| |||||||||| |  |   |     
T  12780712 catcattaaccgcatttttcttaacacatctatctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttc 12780811  T
Q  116 aacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaa 214  Q
    |||| | ||| |||| ||||||||||||||||| |||||   ||| |||| || ||| ||||   |||  ||| ||||||| |||||||||||| |||||    
T  12780812 aacattgtttgcttttaatgtcctcatatcatcctcaagtgttgaaacccgattaagaaaatccttgtgttcacccatcaacttttgatgttcagccaaa 12780911  T
Q  215 tatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttct 313  Q
    || |||||||||||||||| ||||  | || ||||||||||||||  | || ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12780912 taagtttgcacatcaaatagagggtttgcatcatctctaaaaccaacttcaaaatggttaacggcttgaacaaggacttcattttccatgtcttcttct 12781010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 44355937 - 44355641
Alignment:
Q  16 catcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatg 115  Q
    |||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | ||    
T  44355937 catcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtg 44355838  T
Q  116 aacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaa 214  Q
    | ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| |    
T  44355837 agcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccata 44355738  T
Q  215 tatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
    || | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  44355737 taagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttctt 44355641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 84178 - 84476
Alignment:
Q  16 catcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatg 115  Q
    |||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| || | | ||    
T  84178 catcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtg 84277  T
Q  116 aacactattttctttca--atgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaacca 212  Q
    |||||||||| |||| |  || ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||||||| |||  ||||||||| | |||    
T  84278 aacactatttgcttttaatatctcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcatccaccaacctttgatgtttagcca 84377  T
Q  213 aatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
     ||| | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  84378 tataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcattttccatgtcttctt 84476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 2501626 - 2501330
Alignment:
Q  16 catcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaac-at 114  Q
    |||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||| ||||||| ||  |    
T  2501626 catcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaata-ttttctctactgt 2501528  T
Q  115 gaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaa 213  Q
    |||||||||||  ||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| |||     
T  2501527 gaacactatttgattttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgttcagccat 2501428  T
Q  214 atatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
    ||| | |||||||||||||| |||| |  ||||||||| || ||||  | || ||||||||| ||||| ||| | |||||||||||||||||| ||||    
T  2501427 ataagcttgcacatcaaataaagggtacgcaccatctccaataccaacttcagaatggttaacggctttaaccaagacatcattttccatgtcctctt 2501330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 311
Target Start/End: Original strand, 31395865 - 31396085
Alignment:
Q  92 ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatcc 191  Q
    |||||||||||||| |  | | ||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | | |  ||  ||    
T  31395865 ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttttgttcgccc 31395964  T
Q  192 atcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaagga 290  Q
    | |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||||| || ||||  | || ||||||||| ||||| ||||| ||    
T  31395965 accaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttcaaaatggttaacggctttaacaaaga 31396064  T
Q  291 catcattttccatgtcttctt 311  Q
    ||||||||| |||||||||||    
T  31396065 catcatttttcatgtcttctt 31396085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 2501926 - 2502209
Alignment:
Q  28 catccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttc 127  Q
    |||| |||||||||||||||  ||| || |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | |||||||||||| |    
T  2501926 catcaatcttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgc 2502024  T
Q  128 tttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcaca 226  Q
    ||| ||| || |||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| ||| ||| | |||||||    
T  2502025 tttaaatatcatcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgttcagccatataagcttgcaca 2502124  T
Q  227 tcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 311  Q
    ||||||| |||  || ||||||||| || ||||  | || ||| ||||| ||||| ||| |  ||||||||||||||||||||||    
T  2502125 tcaaataaaggatatgcaccatctccaataccaacttcagaatcgttaacggctttaaccaatacatcattttccatgtcttctt 2502209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University