View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_high_16 (Length: 274)
Name: NF16432_high_16
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 44613849 - 44614093
Alignment:
| Q |
20 |
ggtgagttattattattttggcaaaaacaaaactacacttttagaatattaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaat |
119 |
Q |
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| T |
44613849 |
ggtgagttattattattttggcaaaaacaaaactacacttttaaaatattaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaat |
44613948 |
T |
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| Q |
120 |
aataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttctataactcttagtggtctgatttgaggaccactgttttctttgtt |
219 |
Q |
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| T |
44613949 |
aataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttctataactcttggtggtctgatttgaggaccactgttttctttatt |
44614048 |
T |
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| Q |
220 |
gttgaaaggaatgactgcaaaattacattaccattgttgtctgtg |
264 |
Q |
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| T |
44614049 |
gttgaaaggaacgactgcaaaattacattaccattgttctctgtg |
44614093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 2227615 - 2227707
Alignment:
| Q |
38 |
tggcaaaaacaaaactacacttttagaatattaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtataca |
133 |
Q |
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| T |
2227615 |
tggcaaaaacaaaacaaaacttt-agagtattaccaccataattttatcaaactcatcgttcatccaaacatacactcaaata--aattgtataca |
2227707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 17058161 - 17058190
Alignment:
| Q |
207 |
tgttttctttgttgttgaaaggaatgactg |
236 |
Q |
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| T |
17058161 |
tgttttctttgttgttgaaaggaatgactg |
17058190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 24751456 - 24751420
Alignment:
| Q |
73 |
accatgattttatcaaattcatcgttcatccaaacat |
109 |
Q |
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| T |
24751456 |
accatgattttatcaaattcatcgtcaatccaaacat |
24751420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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