View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_high_17 (Length: 265)
Name: NF16432_high_17
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 8310124 - 8310373
Alignment:
| Q |
2 |
tcatcatcatcatcttcttcttcttgcagtttgcaagctgcaaggaaacgtttactgttcttatgatttacatcactgaagttgattaatgatctgaaaa |
101 |
Q |
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| T |
8310124 |
tcatcatcatcatcttcttcttcttgcagtttgcaagctgcaaggaaacgtttactgttcttatgatttaaatcactgaagttgattaatgatctgaaaa |
8310223 |
T |
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| Q |
102 |
cgtgattcctcacaaatacatgatcaacaactagtgatttccacatcttagaaatgcacatcaattcaactggattatctgaatcaattcttgatatgat |
201 |
Q |
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| T |
8310224 |
cgtgattcctcacaaatacatgatcaacaactagtgatttccacatcttagaaatgcacatcaattcaactggattatctgaatcaattcttgatatgat |
8310323 |
T |
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| Q |
202 |
atggatcaatagttcatgcgggagttcttgaaatgataccgccgttgttg |
251 |
Q |
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| T |
8310324 |
atggatcaatagttcatgcgggagttcttgaaatgataccgccgttgttg |
8310373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 30411785 - 30411914
Alignment:
| Q |
43 |
aaggaaacgtttactgt--tcttatgatttacatcactgaagttgattaatgatctgaaaacgtgattcctcacaaatacatgatcaacaactagtgatt |
140 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30411785 |
aaggaagcgtttactgtgttcttatgatttacatcactgaagtcagttaacattctggaaaggtgattcctcacaaatacatgatcaacaactagtgatt |
30411884 |
T |
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| Q |
141 |
tccacatcttagaaatgcacatcaattcaa |
170 |
Q |
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| T |
30411885 |
tccacaacttacaaatgcacctcaaatcaa |
30411914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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