View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_high_21 (Length: 202)
Name: NF16432_high_21
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 51343042 - 51342858
Alignment:
| Q |
1 |
ccaacttgtgcaatctagaaaaacttcaaaagcaatgtttgaggcagcaaaatcaggaaacattataattttagattttatcttcaactacaatccgaat |
100 |
Q |
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| T |
51343042 |
ccaacttgtgcaatctagaaaaacttcaaaagcaatgtttgaggcagcaaaatcaggaaacattataattttagattttatcttcaactacaatccgaat |
51342943 |
T |
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| Q |
101 |
ctattcatggaagtcaattcagaagggcaaagcatacttcacattgctatcttatataggaaaggaagtgtatatcgtttaatat |
185 |
Q |
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| T |
51342942 |
ctattcatggaagtcaattcaaaagggcaaagcatacttcacattgctatcttatataggaaaggaagtgtatatcgtttaatat |
51342858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 51319205 - 51319077
Alignment:
| Q |
19 |
aaaaacttcaaaagcaatgtttgaggcagcaaaatcaggaaacattataattttagattttatcttcaactacaatccgaatctattcatggaagtcaat |
118 |
Q |
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| T |
51319205 |
aaaaacttcaaaagcaatgtttgatgcagcacagttaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaat |
51319106 |
T |
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| Q |
119 |
tcagaagggcaaagcatacttcacattgc |
147 |
Q |
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| T |
51319105 |
tctgaagggcaaagtttacttcacgttgc |
51319077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 51312826 - 51312726
Alignment:
| Q |
44 |
gcagcaaaatcaggaaacattataattttagattttatcttcaactacaatccgaatctattcatggaagtcaattcagaagggcaaagcatacttcaca |
143 |
Q |
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| T |
51312826 |
gcagcaaaatcaggaaacatcatggttttaaaatttatttttaactataaccccaatttgtttatggaagtcaatcctcaagggcaaaacttacttcaca |
51312727 |
T |
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| Q |
144 |
t |
144 |
Q |
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| T |
51312726 |
t |
51312726 |
T |
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