View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_high_4 (Length: 498)
Name: NF16432_high_4
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Complemental strand, 45185569 - 45185100
Alignment:
| Q |
13 |
aatatgtcaagaaaaataacaatcaatatctaataccatctctcaaatattatatttt-agagaagatggttggtgggtaattgaaataaagcagggaca |
111 |
Q |
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| T |
45185569 |
aatatgtcaagaaaaataacaatcaatatctaataccatctctcaaatattatatttttagagaagatggttggtgggtaattgaaataaagcagggaca |
45185470 |
T |
|
| Q |
112 |
agaagagttgaataagaaataaagattaaaataaaaaacattgttgggacatgccatgtccaaggtgcaa-gagttatgggtacctccctaataaatcaa |
210 |
Q |
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||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45185469 |
agaagagttgaataagaaataaagaaaaaaataaaacacgttgttgggacatgccatgtccaaggtgcaaagagttatgggtacctccctaataaatcaa |
45185370 |
T |
|
| Q |
211 |
tgtcacctcctatcttcttcaaaccttcttcctcaaagacaaaagggacaaggccattcaatgagctaaggggccatggccatgaggccaactttgcttt |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45185369 |
tgtcaccttctatcttcttcaaaccttcttcctcaaagacaaaagggacaaggccattcaatgagctaaggggccatggccatgaggccaactttgcttt |
45185270 |
T |
|
| Q |
311 |
tcttttgcctggttggtgggacagtaggtgggtctctacccctacattgggtctgcaccgtccccagccctctcgcactcacatcaccaagtctggtccc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45185269 |
tcttttgcctggttggtgggacagtaggtgggtctctacccctacattgggtctgcaccgtccccagccctctcgcactcacatcaccaagtctggtccc |
45185170 |
T |
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| Q |
411 |
tctcccttctaattaagactatcacctctctaagggactcgcgaggataatgggtacctctaggtgtggg |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45185169 |
tctcccttctaattaagactatcacctctctaagggactcgcgaggataatgggtacctctaggtgtggg |
45185100 |
T |
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