View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16432_high_6 (Length: 447)
Name: NF16432_high_6
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 30626476 - 30626904
Alignment:
| Q |
1 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtacgcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30626476 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtactcatg |
30626575 |
T |
|
| Q |
101 |
cgcacatattcgttttgttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcgcctcatggcgatatcta |
200 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30626576 |
cgcatatagtcgtt--gttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggcgatatcta |
30626673 |
T |
|
| Q |
201 |
cagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgtaagatgaaa |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30626674 |
cagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagtctacatgcattctgtaagatgaaa |
30626773 |
T |
|
| Q |
301 |
gttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30626774 |
gttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
30626873 |
T |
|
| Q |
401 |
tgatgtttgctataattggagttgcatgttc |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30626874 |
tgatgtttgctataattggagttgcatgttc |
30626904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 30663427 - 30663685
Alignment:
| Q |
1 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtacgcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30663427 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtacgcatg |
30663526 |
T |
|
| Q |
101 |
cgcacatattcgttttgttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcgcctcatggcgatatcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30663527 |
cgcacatattcgttttgttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggtgatatcta |
30663626 |
T |
|
| Q |
201 |
cagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgt |
259 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30663627 |
cagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt |
30663685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 30672107 - 30672365
Alignment:
| Q |
1 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtacgcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30672107 |
ctcctggtaagttctttcacttggtaattataatttattgtttacttttaaattgctttatttatgatcaatgagttagaatttattatatgtacgcatg |
30672206 |
T |
|
| Q |
101 |
cgcacatattcgttttgttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcgcctcatggcgatatcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30672207 |
cgcacatattcgttttgttcattttttcctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggtgatatcta |
30672306 |
T |
|
| Q |
201 |
cagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgt |
259 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30672307 |
cagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt |
30672365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 301 - 434
Target Start/End: Original strand, 30663700 - 30663833
Alignment:
| Q |
301 |
gttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30663700 |
gttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
30663799 |
T |
|
| Q |
401 |
tgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30663800 |
tgatgtttgctataattggagttgcatgttctga |
30663833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 301 - 434
Target Start/End: Original strand, 30672380 - 30672513
Alignment:
| Q |
301 |
gttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30672380 |
gttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag |
30672479 |
T |
|
| Q |
401 |
tgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30672480 |
tgatgtttgctataattggagttgcatgttctga |
30672513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 122 - 434
Target Start/End: Original strand, 35371052 - 35371365
Alignment:
| Q |
122 |
ttttttcctaaactgttgatgttattgtttgtgaa-gagtatggagcgggtggccaagtatcgcctcatggcgatatctacagctacgggattcttctat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||| || | |||| | |||||| || ||||| |||||||| |||| ||||||||||| | |
|
|
| T |
35371052 |
ttttttcctaaactgttgatgttgttgtttgaaaaagagtacgggacaggtgttccagtatcaccacatggagatatctatagctttgggattcttctgt |
35371151 |
T |
|
| Q |
221 |
tagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgtaagatgaaagttccagaaggaatctttga |
320 |
Q |
| |
|
|||| |||||||| |||| |||||||||| ||| ||||||||| | ||||| ||||| |||| |||||| || |||||| |||||||||||||| |||| |
|
|
| T |
35371152 |
tagagatgctcaccggaaagagaccaacagataacatgttttctgagagtctaagtctgcatgaattctgcaaaatgaaaattccagaaggaatccttga |
35371251 |
T |
|
| Q |
321 |
gatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttgctataattgga |
420 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
35371252 |
gatagtagattcacatttgcttttaccatttgctgaagatgatacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattgga |
35371351 |
T |
|
| Q |
421 |
gttgcatgttctga |
434 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35371352 |
gttgcatgttctga |
35371365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 193 - 434
Target Start/End: Original strand, 35411282 - 35411523
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||| |||||| || |||||||||||||| || ||||| | ||||| |||||||||| |||||| | |
|
|
| T |
35411282 |
gatatctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaataacaacttttctgagagtctaagtctacatgaattctgca |
35411381 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
| |||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35411382 |
aaatgaaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
35411481 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
||| || ||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
35411482 |
ttgtttggtgatgtttgctagaatcggagttgcatgctctga |
35411523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 193 - 432
Target Start/End: Original strand, 35386636 - 35386875
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||| |||| |||| |||||||||||||| || ||||| | || | ||||| ||| |||||| | |
|
|
| T |
35386636 |
gatatctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaataacaacttttctgagagattaagtctgcataaattctgca |
35386735 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
| || ||| ||||||||| |||| |||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35386736 |
aaataaaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttgctgaagatgagatggggattgtggaaaacaagattaggaa |
35386835 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttct |
432 |
Q |
| |
|
||| || |||||||||||| ||||||||| ||||||||| |
|
|
| T |
35386836 |
ttgtttggtgatgtttgctgcaattggagtcgcatgttct |
35386875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 351
Target Start/End: Original strand, 35367494 - 35367646
Alignment:
| Q |
199 |
tacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgtaagatga |
298 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||| || | |||||| || || |||||||||||||| |
|
|
| T |
35367494 |
tacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcgagaatcttagccttcacaaattctgtaagatga |
35367593 |
T |
|
| Q |
299 |
aagttccagaaggaatctttgagatagtagattcacatttgcttttgccattt |
351 |
Q |
| |
|
|| |||| | || ||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
35367594 |
aaattcccgtagaaattcttgagatagtggattcacatttgcttatgccattt |
35367646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 434
Target Start/End: Original strand, 35755415 - 35755708
Alignment:
| Q |
141 |
tgttattgtttgtgaagagtatggagcgggtggccaagtatcgcctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaagg |
240 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||| | ||||| || | || ||||| |||||||| |||||||| || || |||||||| || |||| | |
|
|
| T |
35755415 |
tgttgttgtttgaaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattctgctgttggaaatgcttaccggaaag |
35755514 |
T |
|
| Q |
241 |
agaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgtaagatgaaagttccagaaggaatctttgagatagtagattcacatttgc |
340 |
Q |
| |
|
||||||||| ||| |||||||| | | ||| | |||||| |||||||||||||| | |||| |||| ||| ||||| | |||||||| | || | |
|
|
| T |
35755515 |
agaccaacagataacatgttttatgagaatctaactctacacaaattctgtaagatgagaattcctgaagaaattcttgaggttgtagattcccgttgcc |
35755614 |
T |
|
| Q |
341 |
ttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
|| | ||||| | ||||||| ||||| | ||||||||||||| || | | | || ||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35755615 |
ttattccattggttgaagatcagacacgagttgtggaaaacaacataaaggagtgtctagtgatgtttgctaaaataggagttgcatgttctga |
35755708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 35370952 - 35370985
Alignment:
| Q |
42 |
ttacttttaaattgctttatttatgatcaatgag |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35370952 |
ttacttttaaattgctttatttatgatcaatgag |
35370985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 23936014 - 23935955
Alignment:
| Q |
368 |
ggattgtggaaaacaagattaggaattgcttagtgatgtttgctataattggagttgcat |
427 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||| ||||| |||||||| |
|
|
| T |
23936014 |
ggattgtggaaaacaagattaggaggtttttggtgatgtttgctagaattgaagttgcat |
23935955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 434
Target Start/End: Complemental strand, 10415243 - 10415002
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||| | |||| |||||||||| |||||| | |
|
|
| T |
10415243 |
gatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataacatgttttctgagagtcaaagtctacatgaattctgca |
10415144 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
| |||||| |||||||||||||| | ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||||||| ||||||| ||| |
|
|
| T |
10415143 |
aaatgaaaattccagaaggaatcctcgagatagtagattcacaattacttttgccatttgccgaagttgagacggggattgtggaaaataagattaagaa |
10415044 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
|| || |||||||||| | ||| ||||||||||||||||| |
|
|
| T |
10415043 |
gtgtttggtgatgtttggtgcaatcggagttgcatgttctga |
10415002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 431
Target Start/End: Complemental strand, 10420123 - 10419891
Alignment:
| Q |
199 |
tacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgtttt-ccggaagtcttagtctacatgcattctgtaagatg |
297 |
Q |
| |
|
||||||| |||||||| | ||||| ||||||||||||| |||||||||| ||| ||||||| || ||| |||||| || || ||||||||||||| |
|
|
| T |
10420123 |
tacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagccagaa-tcttagccttcacaaattctgtaagatg |
10420025 |
T |
|
| Q |
298 |
aaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgct |
397 |
Q |
| |
|
||| |||| | || ||| |||||||||| ||||||||||||||| |||||||| || ||||| ||||| || |||||| || |||| | | || |
|
|
| T |
10420024 |
aaaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagacactaatgacggaaaaaaacattaaggagtgtc |
10419925 |
T |
|
| Q |
398 |
tagtgatgtttgctataattggagttgcatgttc |
431 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |
|
|
| T |
10419924 |
tagtgatgtttgctgaaataggagttgcatgttc |
10419891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 193 - 432
Target Start/End: Complemental strand, 29622797 - 29622558
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
||||||||||||| || |||||||| ||||| ||||||||||||| ||||||| || ||| |||||||| | | | | || ||||| |||||||| |
|
|
| T |
29622797 |
gatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgttttgtgagaatttaagcctacacaaattctgta |
29622698 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| ||||| | ||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29622697 |
agatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaa |
29622598 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttct |
432 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
29622597 |
ttgtttggtgatgtttgctagaattggagttgcatgttct |
29622558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 193 - 437
Target Start/End: Original strand, 15294354 - 15294598
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||| |||| ||||||||||||||||||||| | | | ||| |||||||| ||| |||| |
|
|
| T |
15294354 |
gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta |
15294453 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| | ||| |||| |||| | ||||| | ||||||| ||||| | ||||||||| || | | | | |
|
|
| T |
15294454 |
agatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaagcagcaaaaagga |
15294553 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttctgatga |
437 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
15294554 |
atgtctagtgatgtttgctaaaataggagttgcatgttctgatga |
15294598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 193 - 437
Target Start/End: Original strand, 15474723 - 15474967
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||| |||| ||||||||||||||||||||| | | | ||| |||||||| ||| |||| |
|
|
| T |
15474723 |
gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta |
15474822 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| | ||| |||| |||| | ||||| | ||||||| ||||| | ||||||||| || | | | | |
|
|
| T |
15474823 |
agatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaagcagcaaaaagga |
15474922 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttctgatga |
437 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
15474923 |
atgtctagtgatgtttgctaaaataggagttgcatgttctgatga |
15474967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 13564891 - 13565039
Alignment:
| Q |
212 |
ttcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgtaagatgaaagttccagaagg |
311 |
Q |
| |
|
||||| |||| || |||||||| |||| ||||||||| ||| ||||||||||| |||| | |||||| | ||||||||||||| |||||||||| |
|
|
| T |
13564891 |
ttcttatattggagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaagg |
13564990 |
T |
|
| Q |
312 |
aatctttgagatagtagattcacatttgcttttgccatttgctgaagat |
360 |
Q |
| |
|
|||| ||| |||||| ||| || ||||||| |||||||| | |||||| |
|
|
| T |
13564991 |
aatccttgcgatagtggatcaacgtttgcttatgccatttacggaagat |
13565039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 434
Target Start/End: Original strand, 1154298 - 1154539
Alignment:
| Q |
193 |
gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttccggaagtcttagtctacatgcattctgta |
292 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||||| ||||| || |||| | | | | || ||| | | || |||| |
|
|
| T |
1154298 |
gatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctatacgagttttgta |
1154397 |
T |
|
| Q |
293 |
agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa |
392 |
Q |
| |
|
| |||||| || | ||||||||| |||||||||| || || ||||||| |||| |||| |||||| |||||| ||||||||||||||||||| || |
|
|
| T |
1154398 |
aaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtcgaagatcagacagaaattgtggaaaacaagattaaaaa |
1154497 |
T |
|
| Q |
393 |
ttgcttagtgatgtttgctataattggagttgcatgttctga |
434 |
Q |
| |
|
|| || ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
1154498 |
gtgtttggtgatgtttgctagaattggagttgcatgtactga |
1154539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University