View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_low_19 (Length: 263)
Name: NF16432_low_19
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 6329716 - 6329477
Alignment:
| Q |
19 |
atcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaaagaaaaatcacaatgctttcattaaaagccaaactta |
118 |
Q |
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| T |
6329716 |
atcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaaagaaaaatcacaatgctttcattaaaagccaaactta |
6329617 |
T |
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| Q |
119 |
gtagtaacccataatcataaactaaccaattggcatctcttgccaaaagaggaagaggtagaagagaataataaactgaaatcacgagtataagattgta |
218 |
Q |
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| T |
6329616 |
gtagtaacccataatcataaactaaccaattggcatctcttgccaaaagaggaagaggtagaagagaataataaactgaaatcacgagtataagattgta |
6329517 |
T |
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| Q |
219 |
acttcccaagagatattccatccacaagccctttgcttct |
258 |
Q |
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| T |
6329516 |
acttcccaagagatattccatccacaagcccattgattct |
6329477 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 49072686 - 49072747
Alignment:
| Q |
20 |
tcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaa |
81 |
Q |
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| T |
49072686 |
tcataaaccttaaaaagtggagtgatgctctttcatgagccaaattaatttgcaaaagtaaa |
49072747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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