View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_low_22 (Length: 239)
Name: NF16432_low_22
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 36932297 - 36932095
Alignment:
| Q |
22 |
agttacagtgattttggattgattgggtgctcaaagttggattgaannnnnnnatatataggaaataaatgaaatgctttaatgtcacatattagaatag |
121 |
Q |
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| T |
36932297 |
agttacagtgattttggattgattgggtgctcaaagttggattgaattttttt-tatataggaaataaatgaaatgctttaatgtcacatattagaataa |
36932199 |
T |
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| Q |
122 |
attaaacatcataacaatagcggcaaatcataatcataaaataccatgtcatgatcaattaaccatgaatctaattgcatgaatttagaatatcatatat |
221 |
Q |
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| T |
36932198 |
attaaacatcataacaatagcggcaaatcataatcataaaataccatgtcatgatcaattaaccatgaatctaattgcatgaatttagaatatcatatat |
36932099 |
T |
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| Q |
222 |
aaag |
225 |
Q |
| |
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|||| |
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| T |
36932098 |
aaag |
36932095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 39144077 - 39143959
Alignment:
| Q |
78 |
tataggaaataaatgaaatgctttaatgtcacatattagaatagattaaacatcataacaatagcggcaaatcat-aatcataaaataccatgtcatgat |
176 |
Q |
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|||| ||||||||| |||| || |||||||||||||||||||| ||| ||||||| |||||||||| || |||| |||||||| || ||||||||||| |
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| T |
39144077 |
tataagaaataaataaaatactctaatgtcacatattagaataaattgcacatcatgacaatagcggaaactcataaatcataatatgtcatgtcatgat |
39143978 |
T |
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| Q |
177 |
caattaaccatgaatctaa |
195 |
Q |
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| T |
39143977 |
ccattagccatgaatctaa |
39143959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 39148153 - 39148024
Alignment:
| Q |
84 |
aaataaatgaaatgctttaatgtcac---atattagaatagattaaacatcataacaatagcggcaaatcata-atcataaaataccatgtcatgatcaa |
179 |
Q |
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| T |
39148153 |
aaataaatgaaatactctaatgtcactccatattagaataaattgcatatcatgacaatagcggatactcatatatcataatatgtcatgccatgatcca |
39148054 |
T |
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| Q |
180 |
ttaaccatgaatctaattgcatgaatttag |
209 |
Q |
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| T |
39148053 |
atagccatgaatctaattgtataaatttag |
39148024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 1168347 - 1168307
Alignment:
| Q |
185 |
catgaatctaattgcatgaatttagaatatcatatataaag |
225 |
Q |
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| T |
1168347 |
catgcatctaattgcaagaatttagaatatcatatataaag |
1168307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 13602025 - 13602082
Alignment:
| Q |
83 |
gaaataaatgaaatgctttaatgtcacatattagaatagattaaacatcataacaata |
140 |
Q |
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|||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||| |
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| T |
13602025 |
gaaacaaatgaaaaactctaatgtcacattttagaatatattacacatcataacaata |
13602082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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