View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_low_5 (Length: 459)
Name: NF16432_low_5
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 1246149 - 1245710
Alignment:
| Q |
1 |
tttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246149 |
tttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaaca |
1246050 |
T |
|
| Q |
101 |
ttcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctc |
200 |
Q |
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| T |
1246049 |
ttcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctc |
1245950 |
T |
|
| Q |
201 |
acataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245949 |
acataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagct |
1245852 |
T |
|
| Q |
301 |
nnnnnncctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttt |
400 |
Q |
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| T |
1245851 |
ttttttcctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttt |
1245752 |
T |
|
| Q |
401 |
tgaatcttgtaaagccgaggagataaacgtgatgaagacgat |
442 |
Q |
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| T |
1245751 |
tgaatcttgtaaagccgaggagataaacgtgatgaagacgat |
1245710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 42010811 - 42010365
Alignment:
| Q |
1 |
tttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010811 |
tttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactataaaacatgaaacctcaaaattcagcaacaataatctactgcaaca |
42010712 |
T |
|
| Q |
101 |
ttcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42010711 |
ttcaatctgaatttgttaccaaactactgatatttcaaaaatcatttccctcatactctatgatgaagacaaaaatctgatagcataaaactctactctc |
42010612 |
T |
|
| Q |
201 |
acataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010611 |
acataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagct |
42010514 |
T |
|
| Q |
301 |
nnnnnncctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttt |
400 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010513 |
ttttttcctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttt |
42010414 |
T |
|
| Q |
401 |
tgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatg |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010413 |
tgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatg |
42010365 |
T |
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