View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16432_low_9 (Length: 401)
Name: NF16432_low_9
Description: NF16432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16432_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 12021395 - 12021781
Alignment:
| Q |
17 |
agattgcttgtgttcttaggtttggaatatatttcaaacaaactatgaaacgttttggtatatttcttaggtttagaatatattcctaataaggtgccta |
116 |
Q |
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| T |
12021395 |
agattgcttgtgttcttaggtttggaatatatttcaaacaaactatgaaacgttttggtatatttcttaggtttagaatatattcctaataaggtgccta |
12021494 |
T |
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| Q |
117 |
tgacatttacttttgagtatatagtaagcttacgtaaatgtcatgcacccaagccatttaactct--atcaatttctttgtgttaattccaatgtttttt |
214 |
Q |
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| T |
12021495 |
tgacatttactttggagtatatagtaagcttacgtaaatgtcatgcacccaagccatttaactctctatcaatttctttgtgttaattccaatgttgttt |
12021594 |
T |
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| Q |
215 |
ctggattttgatcctctttaagttgataatttttaattagatccaaattattaggaaaagttgtggtagaccttgacttcaggagggatgaagagaaatc |
314 |
Q |
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| T |
12021595 |
ctggattttgatcctctttaagttgataatttttaattagatccaaattattagaaaaagttgtggtagaccttgacttcaggagggatgaagagaaatc |
12021694 |
T |
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| Q |
315 |
actcaagtctaaacgaaatcactcaagaatattaatagaactcnnnnnnnnnatctttagtaattttctaaattgtgcgataatatt |
401 |
Q |
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| T |
12021695 |
actcaagtctaaacgaaatcactcaagaatattaatagaactctttttttttatcttcagtaattttctaaattgtgcgataatatt |
12021781 |
T |
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