View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16433_high_1 (Length: 580)

Name: NF16433_high_1
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16433_high_1
NF16433_high_1
[»] chr8 (2 HSPs)
chr8 (1-549)||(41980150-41980707)
chr8 (4-491)||(3466722-3467207)
[»] chr6 (1 HSPs)
chr6 (4-491)||(10825278-10825764)
[»] chr7 (2 HSPs)
chr7 (257-371)||(42739673-42739786)
chr7 (257-371)||(48458926-48459039)
[»] chr4 (4 HSPs)
chr4 (257-371)||(42945635-42945748)
chr4 (257-371)||(49519000-49519113)
chr4 (449-491)||(53729284-53729326)
chr4 (101-153)||(49519234-49519285)
[»] chr1 (1 HSPs)
chr1 (257-371)||(48510178-48510291)
[»] scaffold0051 (1 HSPs)
scaffold0051 (160-211)||(14119-14170)
[»] chr3 (1 HSPs)
chr3 (160-211)||(53713554-53713605)
[»] chr2 (1 HSPs)
chr2 (160-211)||(31622276-31622327)


Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 41980707 - 41980150
Alignment:
Q  1 actaactatttcatggctttgaaattctattgcaaacattcatctcttcttctttaatgctcacatctctcagttcttccatttatttcagannnnnnnn 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            
T  41980707 actaactattccatggctttgaaattctattgcaaacattcatctcttcttctttaatgttcacatctctcagttcttccatttatttcagatttttttt 41980608  T
Q  101 --cccaaaatttttaatttcacattcttgtttcgattgaagctttctatggagattgaacattttcctcattctttctccttcattttaatttttcatca 198  Q
      |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41980607 tccccaaaatttttaatttcacattcttgtttcgattgaagctt-ctatggagattgaacattttcctcattctttctccttcattttaatttttcatca 41980509  T
Q  199 gatctgcaaaaatgagca-taagtgttcctgaacagaggggnnnnnnn-tggagctagttgaagcatgggtaaaaagggaaaagtatatttgtcagtaaa 296  Q
    |||||||||||||||||| |||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41980508 gatctgcaaaaatgagcagtaagtgttccagaacagaggggaaaaaaaatggagctagttgaagcatgggtaaaaagggaaaagtatatttgtcagtaaa 41980409  T
Q  297 aacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttctaaacccacattttgggtctaaaagtgagtttccagaattgct 396  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||    
T  41980408 aacaaatttgcaaccacgttttgagttgctgcagaagctaagaaatgtggcttcttctaaacttacgttttgggtctaaaagtgagttttcagaattgct 41980309  T
Q  397 tctggttgcatccaaacatctcagaaaatgataaaaccgtgtttgggctcgcaaacctgcgtttggggagcggaaacgctcaaccaaacagacacataga 496  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41980308 tttggttgtatccaaacatctcagaaaatgataaaaccgtgtttgggctcgcaaacctgcgtttggggagcgaaaacgctcaaccaaacagacatataga 41980209  T
Q  497 ctag------gttatggaagcttgctcttttggcccctttaattgttcacaggttctgc 549  Q
    ||||       ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  41980208 ctagatcatccttatggaagcttgctcttttggcccctctaattgttcacagtttctgc 41980150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 491
Target Start/End: Complemental strand, 3467207 - 3466722
Alignment:
Q  4 aactatttcatggctttgaaattctattgcaaacattcatctcttcttctttaatgctcacatctctcagttcttccatttatttcagannnnnnnnccc 103  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||        ||     
T  3467207 aactattccatgactttgaaattctattgcaaacattcctctcttcttctttaatgctaacatctctcagttcctccatttatttcagattttttttcc- 3467109  T
Q  104 aaaatttttaatttcacattcttgtttcgattgaagctttctatggagattgaacattttcctcattctttctccttcattttaatttttcatcagatct 203  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  3467108 aaaatatttaatttctcattcttgtttcgattgaagctt-ctatggagattgaacattttcctcaatcttcctccttcattttaatttttcaccagatct 3467010  T
Q  204 gcaaaaatgagcataag-tgttcctgaacagaggggnnnnnnntggagctagttgaagcatgggtaaaaagggaaaagtatatttgtcagtaaaaacaaa 302  Q
    ||||||||||||| ||| |||||| ||||| || |        ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  3467009 gcaaaaatgagcagaaggtgttccagaacatagagaaaaaaattggagctagttgaagcatgggtaaaaagggaaaagtatatttgtcagcaaaatcaaa 3466910  T
Q  303 tttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttctaaacccacattttgggtctaaaagtgagtttccagaattgcttctggt 402  Q
    | | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  3466909 tctacaaccacgttt-gagtggccgcataagctaagaaatgtggcttcttctaaacccacgttttgggtctaaaagtgagttttcagaattacttttggt 3466811  T
Q  403 tgcatccaaacatctcagaaaatgataaaaccgtgtttgggctcgcaaacctgcgtttggggagcggaaacgctcaaccaaacagacac 491  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3466810 tgcatccaaacatctcagaaaatgagaaaaccatgtttgggcttgcaaacctgcgtttggggagcggaaacgctcaaccaaacagacac 3466722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 4 - 491
Target Start/End: Complemental strand, 10825764 - 10825278
Alignment:
Q  4 aactatttcatggctttgaaattctattgcaaacattcatctcttcttctttaatgctcacatctctcagttcttccatttatttcagannnnnnnnccc 103  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  10825764 aactattccatgactttgaaattctattgcaaacattcctctcttcttctttaatgctcacatctctcagttcttccatttatttcagattttttt-ccc 10825666  T
Q  104 aaaatttttaatttcacattctt-gtttcgattgaagctttctatggagattgaacattttcctcattctttctccttcattttaatttttcatcagatc 202  Q
    ||||| ||||||||| ||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||| ||| ||||||| || |||||||| ||||    
T  10825665 aaaatatttaatttctcattctttgtttcaattgaagctt-ctatggagattgagcattttcctcattcttcctctttcatttaaaattttcatcggatc 10825567  T
Q  203 tgcaaaaatgagcataag-tgttcctgaacagaggggnnnnnnntggagctagttgaagcatgggtaaaaagggaaaagtatatttgtcagtaaaaacaa 301  Q
    |||||||||||||| ||| |||||| ||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |    
T  10825566 tgcaaaaatgagcagaaggtgttccagaacagagggaaaaaaattggagttagttgaagcatgggtaaaaagggaaaagtatatttgtcagcaaaagcga 10825467  T
Q  302 atttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttctaaacccacattttgggtctaaaagtgagtttccagaattgcttctgg 401  Q
    || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||  || |||    
T  10825466 atctgcaaccacgttt-gagttgccgcagaagctaagaaatgtggcttcttctaaacccacgttttgggtctaaaagtgagtttcaagacttaattttgg 10825368  T
Q  402 ttgcatccaaacatctcagaaaatgataaaaccgtgtttgggctcgcaaacctgcgtttggggagcggaaacgctcaaccaaacagacac 491  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||    
T  10825367 ttgcatccaaacatctcagaaaatgataaaaccgcgtttgggtttgcaaacctgtgtttggggagcggaaacactcaaccaaacagacac 10825278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 42739786 - 42739673
Alignment:
Q  257 gaagcatgggtaaaaagggaaaagtatatttgtcag-taaaaacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttcta 355  Q
    |||||||||||||| |||||||| || ||||||||| ||||||||||||| |||||| |||| ||||||||||| |||||| |   | ||||||||||||    
T  42739786 gaagcatgggtaaatagggaaaa-tacatttgtcagctaaaaacaaatttccaaccaagttt-gagttgccgcagaagctatgttttctggcttcttcta 42739689  T
Q  356 aacccacattttgggt 371  Q
    ||||||| ||||||||    
T  42739688 aacccacgttttgggt 42739673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 48459039 - 48458926
Alignment:
Q  257 gaagcatgggtaaaaagggaaaagtatatttgtcag-taaaaacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttcta 355  Q
    |||||||||||||| |||||||| || || |||||| ||||| ||||||| |||||| |||| |||||||||||||||||| |   | ||||||||||||    
T  48459039 gaagcatgggtaaatagggaaaa-tacatctgtcagctaaaagcaaatttccaaccaagttt-gagttgccgcataagctatgttttctggcttcttcta 48458942  T
Q  356 aacccacattttgggt 371  Q
    ||||||| ||||||||    
T  48458941 aacccacgttttgggt 48458926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 371
Target Start/End: Original strand, 42945635 - 42945748
Alignment:
Q  257 gaagcatgggtaaaaagggaaaagtatatttgtcag-taaaaacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttcta 355  Q
    |||||||||||||| |||||||| || ||||||||| ||||||||||||| |||||| |||| |||||||| || |||||| |   | ||||||||||||    
T  42945635 gaagcatgggtaaatagggaaaa-tacatttgtcagctaaaaacaaatttccaaccaagttt-gagttgccccaaaagctatgttttctggcttcttcta 42945732  T
Q  356 aacccacattttgggt 371  Q
    ||||||| ||||||||    
T  42945733 aacccacgttttgggt 42945748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 49519113 - 49519000
Alignment:
Q  257 gaagcatgggtaaaaagggaaaagtatatttgtcag-taaaaacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttcta 355  Q
    |||||||||||||| |||||||| || |||||| || ||||| ||||||| |||||| |||| |||||||| || |||||| |   | ||||||||||||    
T  49519113 gaagcatgggtaaatagggaaaa-tacatttgttagctaaaagcaaatttccaaccaagttt-gagttgccacagaagctatgttttctggcttcttcta 49519016  T
Q  356 aacccacattttgggt 371  Q
    ||||||| ||||||||    
T  49519015 aacccacgttttgggt 49519000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 53729284 - 53729326
Alignment:
Q  449 aaacctgcgtttggggagcggaaacgctcaaccaaacagacac 491  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  53729284 aaacgtgcgttttgggagcggaaacgctcaaccaaacagacac 53729326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 49519285 - 49519234
Alignment:
Q  101 cccaaaatttttaatttcacattcttgtttcgattgaagctttctatggagat 153  Q
    |||||||||||||||||  ||||||||| | ||||||||||||| ||||||||    
T  49519285 cccaaaatttttaatttttcattcttgtgttgattgaagctttc-atggagat 49519234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 48510291 - 48510178
Alignment:
Q  257 gaagcatgggtaaaaagggaaaagtatatttgtcag-taaaaacaaatttgcaaccacgttttgagttgccgcataagctaagaaatgtggcttcttcta 355  Q
    |||||||||||||| |||||||| || ||||||||| |||||||||||||  ||||| |||| ||||||||||| |||||| |   | ||||||||||||    
T  48510291 gaagcatgggtaaatagggaaaa-tacatttgtcagctaaaaacaaattttgaaccaagttt-gagttgccgcagaagctatgttttctggcttcttcta 48510194  T
Q  356 aacccacattttgggt 371  Q
    ||||||| ||||||||    
T  48510193 aacccacgttttgggt 48510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 14170 - 14119
Alignment:
Q  160 ttttcctcattctttctccttcattttaatttttcatcagatctgcaaaaat 211  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||||||    
T  14170 ttttcctcattcttcctccttcattttcatttttattcagatctgcaaaaat 14119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 53713605 - 53713554
Alignment:
Q  160 ttttcctcattctttctccttcattttaatttttcatcagatctgcaaaaat 211  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||||||    
T  53713605 ttttcctcattcttcctccttcatttttatttttattcagatctgcaaaaat 53713554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 31622327 - 31622276
Alignment:
Q  160 ttttcctcattctttctccttcattttaatttttcatcagatctgcaaaaat 211  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||||||    
T  31622327 ttttcctcattcttcctccttcattttcatttttattcagatctgcaaaaat 31622276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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