View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_high_10 (Length: 344)
Name: NF16433_high_10
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_high_10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 343
Target Start/End: Original strand, 38286002 - 38286319
Alignment:
| Q |
22 |
ttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtatgtagttgcatatatttattaaaggttactatttcattcattcatgta |
121 |
Q |
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| T |
38286002 |
ttttgatattttttatagtgaaattggaattttcttacatgttta----atatgtagttgcatatatttattaaaggttactatttcattcattcatgta |
38286097 |
T |
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| Q |
122 |
aatgatgcaagttattcaaacaaggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttac |
221 |
Q |
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||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286098 |
aattatacaggttattcaaacaaggcatatcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttac |
38286197 |
T |
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| Q |
222 |
tccatgattactagccttggaaattttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttacca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286198 |
tccatgattactagccttggaaattttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttacca |
38286297 |
T |
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| Q |
322 |
tgatgcttagtcccttcacttt |
343 |
Q |
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|||||||||||||||||||||| |
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| T |
38286298 |
tgatgcttagtcccttcacttt |
38286319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 28159700 - 28160019
Alignment:
| Q |
22 |
ttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtatgtagttgcatatatttattaaa-ggttactatttcattcattcatgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28159700 |
ttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtac----ttgcatatatttattaaaaggttactatttcattcattcatgt |
28159795 |
T |
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| Q |
121 |
aaatgatgcaagttattcaaacaaggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcattta |
220 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159796 |
aaattatgcaggttattcaaacaaggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcattta |
28159895 |
T |
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| Q |
221 |
ctccatgattactagccttggaaattttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttacc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28159896 |
ctccatgattactagccttggaaattttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatgactttcaaatgctatttacc |
28159995 |
T |
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| Q |
321 |
atgatgcttagtcccttcactttc |
344 |
Q |
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|||||||||||||||||||||||| |
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| T |
28159996 |
atgatgcttagtcccttcactttc |
28160019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 14358689 - 14358371
Alignment:
| Q |
22 |
ttttgatattttttatagtgaaattggaattttcttacatgtttagtatgtatgtagttgcatatatttattaaaggttactatttcattcattcatgta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358689 |
ttttgatattttttatagtgaaattggaattttcttacatgtttagtatgta----gttgcatatatttattaaaggttactatttcattcattcatgta |
14358594 |
T |
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| Q |
122 |
aatgatgcaagttattcaaacaaggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttac |
221 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14358593 |
aattatgcaggttattcaaacaaggcatgtcatgggcatcttggtgctttaaattcttcaattttgtaggtttcaccattgagttctcaggttcatttac |
14358494 |
T |
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| Q |
222 |
tccatgattactagccttggaaattttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttacca |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
14358493 |
tccatgattactagccttggaaattttggcaattatagtttagtgtaaattgttgtataacagcctaggcgtaagtatggcttttaaatactatttacca |
14358394 |
T |
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| Q |
322 |
tgatgcttagtcccttcactttc |
344 |
Q |
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||||||||||||||||||||||| |
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| T |
14358393 |
tgatgcttagtcccttcactttc |
14358371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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