View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16433_high_11 (Length: 337)

Name: NF16433_high_11
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16433_high_11
NF16433_high_11
[»] chr1 (7 HSPs)
chr1 (105-269)||(21971882-21972046)
chr1 (18-92)||(32153756-32153830)
chr1 (18-86)||(4280094-4280162)
chr1 (18-78)||(17483734-17483794)
chr1 (18-94)||(29437814-29437890)
chr1 (52-93)||(36674259-36674300)
chr1 (18-94)||(50225378-50225456)
[»] chr3 (14 HSPs)
chr3 (18-94)||(48921670-48921746)
chr3 (18-94)||(16869537-16869614)
chr3 (18-94)||(1330967-1331042)
chr3 (22-94)||(10284611-10284686)
chr3 (18-86)||(42044220-42044288)
chr3 (18-92)||(30819879-30819953)
chr3 (18-57)||(38670789-38670828)
chr3 (18-92)||(15996735-15996809)
chr3 (60-94)||(29383057-29383091)
chr3 (60-94)||(35938408-35938442)
chr3 (18-92)||(48904225-48904299)
chr3 (18-94)||(12918798-12918874)
chr3 (18-94)||(15095199-15095275)
chr3 (20-92)||(34811318-34811389)
[»] chr4 (9 HSPs)
chr4 (18-94)||(17781385-17781462)
chr4 (22-94)||(15496136-15496208)
chr4 (22-94)||(52575626-52575696)
chr4 (18-92)||(18872718-18872792)
chr4 (18-94)||(19839911-19839989)
chr4 (18-94)||(17261345-17261422)
chr4 (26-94)||(24178019-24178086)
chr4 (18-57)||(24177421-24177460)
chr4 (18-87)||(7698435-7698505)
[»] chr5 (4 HSPs)
chr5 (117-281)||(1160228-1160392)
chr5 (18-94)||(39971015-39971091)
chr5 (22-94)||(9977986-9978060)
chr5 (18-92)||(20142221-20142295)
[»] chr6 (4 HSPs)
chr6 (36-94)||(180588-180646)
chr6 (151-265)||(14459129-14459243)
chr6 (22-94)||(4746088-4746163)
chr6 (175-256)||(20794130-20794211)
[»] chr7 (5 HSPs)
chr7 (177-250)||(39844725-39844798)
chr7 (27-94)||(24282038-24282108)
chr7 (148-256)||(22196758-22196866)
chr7 (148-256)||(22240955-22241063)
chr7 (18-78)||(1574720-1574780)
[»] chr2 (4 HSPs)
chr2 (18-92)||(9701071-9701145)
chr2 (18-92)||(7116261-7116335)
chr2 (18-92)||(12890170-12890244)
chr2 (25-94)||(7016090-7016158)
[»] chr8 (2 HSPs)
chr8 (18-92)||(18111937-18112011)
chr8 (18-78)||(13568880-13568941)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 21971882 - 21972046
Alignment:
Q  105 ttgtatttgaagttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaa 204  Q
    |||||||| ||||||||| |||||||| || |||||||   | | ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| |    
T  21971882 ttgtatttaaagttggaagggagggagattctggaggtgtcttgaccggagggggaacggagggtgtttcgaaaaatttggaaaacgggggcaccttcca 21971981  T
Q  205 aggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaag 269  Q
    |||| ||  |||||||| ||||| |||||||||||||||| |||||  |||||||||||||||||    
T  21971982 aggtgatttcttttgttgggaaggctcttttagatcgaatcccgacatgtgtcaacttggaaaag 21972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 32153830 - 32153756
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatat-ttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||||| | |||| |||| ||||| ||||||||| ||||| |||||||||||| ||||||| |||||    
T  32153830 actacctccgtccttaattataagaccttttta-aaaaaatatgttgtccctttttataagacccttttgttattt 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 4280162 - 4280094
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttg 86  Q
    ||||||||||||| | | |||| ||||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  4280162 actacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagatccatttg 4280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 17483734 - 17483794
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataaga 78  Q
    ||||||||||||| | | |||| ||||||||| |||||||| ||||||||||||||||||||    
T  17483734 actacctccgtccctaattataagaccctttt-gaaaaaataatttgtctctttttataaga 17483794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 29437890 - 29437814
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| | | |||| ||| ||||| ||||||||| |||||| |||||||||||| || ||||||||||||    
T  29437890 actacctccgtccctaattataagactctttt-gaaaaaataatttgtccctttttataagacccctttgatattttc 29437814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 36674300 - 36674259
Alignment:
Q  52 aaaaaatatttgtctctttttataagatccttttgatatttt 93  Q
    |||||| ||||||| |||||||||||||||||||| ||||||    
T  36674300 aaaaaaaatttgtccctttttataagatccttttgctatttt 36674259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 50225456 - 50225378
Alignment:
Q  18 actacctccgtcctttactataggaccctttta---gaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    |||||||| |||| ||| |||||||||||||||   ||||||| | ||||||||||||||||||  || |||||||||||    
T  50225456 actacctcagtccctta-tataggacccttttaaaagaaaaaaaaattgtctctttttataagactctattgatattttc 50225378  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 48921670 - 48921746
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48921670 actacctccgtcccttattataggacccttttagaaaaaatatttgtctctttttataagacccttttgatattttc 48921746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 16869614 - 16869537
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctct-ttttataagatccttttgatattttc 94  Q
    ||||||||||||| ||| |||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||||    
T  16869614 actacctccgtcccttattataggacccttttagaaaacaaatttgtctcttttttataagacccttttgatattttc 16869537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 1331042 - 1330967
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||  ||| |||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||    
T  1331042 actacctccgtctattattataggacccttttagaaaaaa-aattgtccctttttataagacccttttgatattttc 1330967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 10284686 - 10284611
Alignment:
Q  22 cctccgtcctttactataggacccttttagaaa---aaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| |||||||||||||||| ||   ||| | ||||| |||||||||||| |||||||||||||||    
T  10284686 cctccgtcccttattataggacccttttaggaagaaaaaaaattgtccctttttataagacccttttgatattttc 10284611  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 42044288 - 42044220
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttg 86  Q
    ||||||||||||| | | |||| || ||||||| |||||  |||||||||||||||||||||| |||||    
T  42044288 actacctccgtccctaattataagatccttttaaaaaaataatttgtctctttttataagatctttttg 42044220  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 30819879 - 30819953
Alignment:
Q  18 actacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | |||||| ||||||||| |||||||| | ||||| |||||||||||| || ||||||||||    
T  30819879 actacctccgtccctaactataagacccttttgagaaaaaa-aattgtccctttttataagacccctttgatattt 30819953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 38670828 - 38670789
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaa 57  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  38670828 actacctccgtcccttattataggacccttttagaaaaaa 38670789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 15996809 - 15996735
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| |||||||||  |||||| ||||||| |||||||||||| || |||| |||||    
T  15996809 actacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctttgctattt 15996735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 29383057 - 29383091
Alignment:
Q  60 tttgtctctttttataagatccttttgatattttc 94  Q
    |||||||||||||||||||||| ||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttc 29383091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 35938408 - 35938442
Alignment:
Q  60 tttgtctctttttataagatccttttgatattttc 94  Q
    |||||||||||||||||||| ||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttc 35938442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 48904299 - 48904225
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| |||||||||| |||||  ||||||| ||||||||||||  |||||| |||||    
T  48904299 actacctccgtccctaattataagacccttttaaaaaaataatttgtccctttttataagactcttttggtattt 48904225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12918874 - 12918798
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| | | |||| |||||| || ||||||||| |||||| |||||||||||||||||||| |||||||    
T  12918874 actacctccatccctaattataagaccctctt-gaaaaaataatttgtccctttttataagatccttttggtattttc 12918798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 15095199 - 15095275
Alignment:
Q  18 actacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| | | ||||  |||||||| |||||||| | ||||| ||||||||||||||| ||||||||||||    
T  15095199 actacctccgtccctaattataaaacccttttgagaaaaaa-aattgtccctttttataagatccctttgatattttc 15095275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34811318 - 34811389
Alignment:
Q  20 tacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||| | | |||| || |||||| ||||||  ||||||| |||||||||||||||||||| |||||    
T  34811318 tacctccgtccctaattataagatcctttt-gaaaaataatttgtccctttttataagatccttttggtattt 34811389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 17781385 - 17781462
Alignment:
Q  18 actacctccgtcctttactataggacccttttag-aaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| ||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||    
T  17781385 actacctccgtcccttattataggacccttttagaaaaaaaaaattgtccctttttataagatccttttgatattttc 17781462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 15496136 - 15496208
Alignment:
Q  22 cctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| |||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||    
T  15496136 cctccgtcccttattataggacccttttagaaaaaaaaattgtccctttttataagacccttttgatattttc 15496208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 52575626 - 52575696
Alignment:
Q  22 cctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| |||||||||||||||||||||  | ||||| | |||||||||| |||||||||||||||    
T  52575626 cctccgtcccttattataggacccttttagaaaaa--aattgtccccttttataagacccttttgatattttc 52575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 18872718 - 18872792
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||    
T  18872718 actacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagatccctttgatattt 18872792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 19839989 - 19839911
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaa--aaaatatttgtctctttttataagatccttttgatattttc 94  Q
    |||| |||||||| ||| ||||||||||||||||||  |||| | ||||  |||||||||||| |||||||||||||||    
T  19839989 actatctccgtcccttattataggacccttttagaagaaaaaaaattgttcctttttataagacccttttgatattttc 19839911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 17261345 - 17261422
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaa-aaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| ||| ||||  ||| |||||||| |||| | ||||||||||||||||||  ||||||||||||||    
T  17261345 actacctccgtcccttattataaaaccattttagaagaaaaaaattgtctctttttataagactcttttgatattttc 17261422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 24178086 - 24178019
Alignment:
Q  26 cgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||| ||| ||||| ||||||||||||||||  | |||| |||||||||||| |||||||||||||||    
T  24178086 cgtcccttattatagaacccttttagaaaaaaattgtgtccctttttataaga-ccttttgatattttc 24178019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 24177421 - 24177460
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaa 57  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  24177421 actacctccgtcctttattataagacccttttagaaaaaa 24177460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7698505 - 7698435
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttga 87  Q
    ||||||||||||| | | |||| |||||||||  |||||||| |||||| |||||||||||| ||||||||    
T  7698505 actacctccgtccctaattataagacccttttgaaaaaaataatttgtccctttttataagacccttttga 7698435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 281
Target Start/End: Original strand, 1160228 - 1160392
Alignment:
Q  117 ttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggctt 216  Q
    |||||| |||| ||||||||||| ||||  ||||||| ||||||| |||||||||| || ||||||||||| || ||||| ||||| ||||| |  ||||    
T  1160228 ttggaagggagagaggttttggaagttacccgtccggtaggggagaggagggtgtttcgccaaatttggaagaccggggctccttccaaggtgagtgctt 1160327  T
Q  217 ttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaagcataattgttta 281  Q
    ||||||||||| ||||  | ||| |||| ||  ||||||| || |||||||| |  |||||||||    
T  1160328 ttgtttggaaggctctccttgattgaatcccttcgcgtgttaatttggaaaaacggaattgttta 1160392  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 39971015 - 39971091
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||||||| | | |||| ||| ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||    
T  39971015 actacctccgtccctaattataagactctttt-gaaaaaataatttgtccctttttataagatccctttgatattttc 39971091  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 9977986 - 9978060
Alignment:
Q  22 cctccgtcctttactataggacccttttaga--aaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| |||||||||||||||||  ||||| | || ||  ||||||||||| |||||||||||||||    
T  9977986 cctccgtcccttattataggacccttttagaagaaaaaaaattatccttttttataagacccttttgatattttc 9978060  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 20142295 - 20142221
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| ||||||||| ||||||| | ||||| |||||||||||| || |||| |||||    
T  20142295 actacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctttgctattt 20142221  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 180588 - 180646
Alignment:
Q  36 tataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  180588 tataagacccttttagaaaaaatatttgtctctttttataaaatctttttgatattttc 180646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 14459129 - 14459243
Alignment:
Q  151 cggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 250  Q
    |||||||| || ||||||||||||| |||||||||||| |  |||||||||| ||||| || ||||||||||||||| ||||    ||| | ||||||||    
T  14459129 cggaagggaagaggagggtgttccgccaaatttggaaatccagggcaccttccaaggtgattgcttttgtttggaaggctctccgggataggattccgac 14459228  T
Q  251 gcgtgtcaacttgga 265  Q
     ||| ||||||||||    
T  14459229 ccgtctcaacttgga 14459243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 4746163 - 4746088
Alignment:
Q  22 cctccgtcctttactataggacccttttagaa---aaaatatttgtctctttttataagatccttttgatattttc 94  Q
    ||||||||| ||| ||||| | ||||||||||   |||| | ||||| ||||||||||||||||||||||||||||    
T  4746163 cctccgtcccttattatagaatccttttagaagaaaaaaaaattgtccctttttataagatccttttgatattttc 4746088  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 20794130 - 20794211
Alignment:
Q  175 gacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgt 256  Q
    ||||||||||||| || |||||||| || ||||| | ||| |||||||||||  ||||| | ||||| ||||||||||||||    
T  20794130 gacaaatttggaagaccggggcaccgtccaaggtgagggcctttgtttggaaagctcttcttgatcggattccgacgcgtgt 20794211  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 39844725 - 39844798
Alignment:
Q  177 caaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 250  Q
    ||||||||||| || || || ||||||||||| ||||||||||||||||||  ||||||||| || ||||||||    
T  39844725 caaatttggaagaccggagctccttcaaaggtgatggcttttgtttggaaggttcttttagaccgtattccgac 39844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 24282038 - 24282108
Alignment:
Q  27 gtcctttactataggacccttttagaa---aaaatatttgtctctttttataagatccttttgatattttc 94  Q
    |||||||| ||||||||||||||||||   |||| | ||||| |||||||||||| |||||||||||||||    
T  24282038 gtcctttattataggacccttttagaagaaaaaaaaattgtccctttttataagacccttttgatattttc 24282108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 22196758 - 22196866
Alignment:
Q  148 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 247  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22196758 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22196857  T
Q  248 gacgcgtgt 256  Q
    |||||||||    
T  22196858 gacgcgtgt 22196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 22241063 - 22240955
Alignment:
Q  148 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 247  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22241063 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22240964  T
Q  248 gacgcgtgt 256  Q
    |||||||||    
T  22240963 gacgcgtgt 22240955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 1574720 - 1574780
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataaga 78  Q
    ||||||||||||| | | |||| |||||||||| |||||| || |||| ||||||||||||    
T  1574720 actacctccgtccctaattataagacccttttaaaaaaaaaatgtgtccctttttataaga 1574780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 9701071 - 9701145
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||||| | |||| ||||||||| |||||||| ||||||| |||||||||||| ||||||| |||||    
T  9701071 actacctccgtccttaattataagaccctttt-gaaaaaataatttgtccctttttataagacccttttggtattt 9701145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7116335 - 7116261
Alignment:
Q  18 actacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| ||||||||| |||||||| ||| ||| |||||||||||||||||||| |||||    
T  7116335 actacctccgtccctaattataagacccttttgagaaaaaaaatt-gtccctttttataagatccttttgctattt 7116261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 12890244 - 12890170
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| |||||||||  |||||| ||||||| |||||||||||| || |||| |||||    
T  12890244 actacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctttgctattt 12890170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 7016090 - 7016158
Alignment:
Q  25 ccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 94  Q
    |||||||||| ||||| ||| |||||| ||||| | | |||||||||||||||||| |||| ||||||||    
T  7016090 ccgtcctttattatagaacctttttagtaaaaaaaat-gtctctttttataagatcattttaatattttc 7016158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 18112011 - 18111937
Alignment:
Q  18 actacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 92  Q
    ||||||||||||| | | |||| ||||||||| ||||||| | ||||| |||||||||||| || |||| |||||    
T  18112011 actacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctttgctattt 18111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13568941 - 13568880
Alignment:
Q  18 actacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataaga 78  Q
    ||||||||||||||| | |||| ||||||||| ||| |||| ||||||| ||||||||||||    
T  13568941 actacctccgtccttaattataagacccttttgagagaaaaaatttgtccctttttataaga 13568880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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