View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_high_13 (Length: 312)
Name: NF16433_high_13
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 46215174 - 46214884
Alignment:
| Q |
13 |
attttaataacattgacacattgtttttctcaaaaaagtgttgcctagcgaataaattatagtggcttaaatgaatgtgttaatacannnnnnnnnn--- |
109 |
Q |
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| T |
46215174 |
atttttataacattgacacattgtttttctcaaaaaagtgttgcctagcgaataaattatagtggcttaaatgaatgtgttaatacatttgttttttttt |
46215075 |
T |
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| Q |
110 |
-----ccacccagagttaatacatatggtaagtattgtcgcacaaaaaattatatttgctttattnnnnnnnnnnnnnnncttttgcaattaactttggg |
204 |
Q |
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| T |
46215074 |
tttttccacccagagttaatacatatggtaagtattgtcgcacaaaaaattatatttgctttattaaaaaaaaaaata--cttttgcaattaactttggg |
46214977 |
T |
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| Q |
205 |
tgaaaatgaccataatcttgtatcacaattttaataaccaagcaattgagttcagatggttaataagtttcacaaatgataagttgttcaata |
297 |
Q |
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| T |
46214976 |
tgaaaatgaccataatcttgtatcacaattttaataaccaagcaattgagttcagatggttaataagtttcacaaatgataagttgttcaata |
46214884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 35947876 - 35947837
Alignment:
| Q |
238 |
ataaccaagcaattgagttcagatggttaataagtttcac |
277 |
Q |
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| T |
35947876 |
ataaccaagcaattgaattcagatggttaatgagtttcac |
35947837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 46218082 - 46218040
Alignment:
| Q |
111 |
cacccagagttaatacatatggtaagtattgtcgcacaaaaaa |
153 |
Q |
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| T |
46218082 |
caccaagagttaatacatttggtaagtattgtcgcgcaaaaaa |
46218040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 38580837 - 38580876
Alignment:
| Q |
238 |
ataaccaagcaattgagttcagatggttaataagtttcac |
277 |
Q |
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| T |
38580837 |
ataaccaagcaattgagttcaaatggttaatgagtttcac |
38580876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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