View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_high_19 (Length: 239)
Name: NF16433_high_19
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 44298202 - 44298406
Alignment:
| Q |
20 |
ctatagaaaaagaaagttattgtagttctgtaatgctttgtctattaggatatttgaattgaaagtcttatagctttgctgttcctaagcatgaagagaa |
119 |
Q |
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| T |
44298202 |
ctatagaaaaagaaagttattgtagttctgtaatgctttgtctattaggatatttgaattgaaagtcttatagctttgctgttcctaagcatgaagagaa |
44298301 |
T |
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| Q |
120 |
tgagaataagaataatcgaaaagggacaatccaatcccttatttttcacgtattagttgatgtgttgatgtatcataatatattattttaacttaccgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298302 |
tgagaataagaataatcgaaaagggacaatccaatcccttatttttcacgtattagttgatgtgttgatgtatcataatatattattttaacttaccgtt |
44298401 |
T |
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| Q |
220 |
tcatc |
224 |
Q |
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||||| |
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| T |
44298402 |
tcatc |
44298406 |
T |
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