View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_high_2 (Length: 525)
Name: NF16433_high_2
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 170 - 511
Target Start/End: Complemental strand, 3879335 - 3878994
Alignment:
| Q |
170 |
ctaaaacaaatcaatgcctatgaaagaggaagcagcacagttaagtgtcactagactcactacaggtaaaaggacctattgtaaactatttcacatgtgg |
269 |
Q |
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| T |
3879335 |
ctaaaacaaatcaatgcctatgaaagaggaagcagcacagttaagtgtcactagactcactacaggtaaaaggacctattgtaaactatttcacatgtgg |
3879236 |
T |
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| Q |
270 |
gtttgaaagatctgcataagtgagaaaacaataatcacaagataatcattcaaaattgaaaatatgcatctttacaattacattgaactactccctaaga |
369 |
Q |
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| T |
3879235 |
gtttgaaagatctgcataagtgagaaaacaataatcacaagataatcattcaaaattgaaaatatgcatctttacaattacattgaactactccctaaga |
3879136 |
T |
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| Q |
370 |
agaagttcgggttatttgcatttccatttccattgatgagagcaagcaaaattggatcaacttgttcagcaacatttccaaggtgatcattattgtacaa |
469 |
Q |
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| T |
3879135 |
agaagttcgggttatttgcatttccatttccattgatgagagcaagcaaaattggatcaacttgttcagcaacatttccaaggtgatcattaatgtacaa |
3879036 |
T |
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| Q |
470 |
tctcggagaaatcaaatgagcagctggaggtggcatcatatt |
511 |
Q |
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| T |
3879035 |
tctcggagaaatcaaatgagcagctggaggtggcatcatatt |
3878994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 3879453 - 3879358
Alignment:
| Q |
14 |
acctgtgtgcctacatcttgcgatggatgactgacaaaacaaaataaaagtgcgtaaagagaaatagtgagggtatttcatgtattaaaatgtgca |
109 |
Q |
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| T |
3879453 |
acctgtgtgcctacatcttgcgatggatgactgacaaaacaaaataaaagtgcgtaaagagaaacagtgagggtatttcatgtattaaaatgtgca |
3879358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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