View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_high_23 (Length: 202)
Name: NF16433_high_23
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 43961415 - 43961586
Alignment:
| Q |
17 |
atttttgtttctgacatatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatc |
116 |
Q |
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| T |
43961415 |
atttttgtttctgacatatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatc |
43961514 |
T |
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| Q |
117 |
ttccttggaaggtattattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttg |
188 |
Q |
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| T |
43961515 |
ttccttggaaggtattattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttg |
43961586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 43954670 - 43954740
Alignment:
| Q |
67 |
acaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattatttt |
137 |
Q |
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| T |
43954670 |
acaaggaagctaattggatcagctcgattctatggataattttacttatcggccttggaaggtattgtttt |
43954740 |
T |
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