View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16433_low_16 (Length: 269)

Name: NF16433_low_16
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16433_low_16
NF16433_low_16
[»] chr1 (1 HSPs)
chr1 (11-251)||(49928751-49928991)
[»] chr2 (1 HSPs)
chr2 (92-160)||(9477866-9477935)
[»] chr3 (1 HSPs)
chr3 (92-160)||(24235783-24235851)
[»] chr6 (5 HSPs)
chr6 (106-160)||(10836737-10836791)
chr6 (86-150)||(7268024-7268088)
chr6 (104-139)||(33818088-33818123)
chr6 (104-160)||(323725-323781)
chr6 (84-124)||(32408825-32408865)
[»] chr4 (2 HSPs)
chr4 (92-160)||(21593111-21593179)
chr4 (108-152)||(32799834-32799878)
[»] chr8 (2 HSPs)
chr8 (117-160)||(1561206-1561249)
chr8 (119-151)||(2091695-2091727)
[»] chr5 (1 HSPs)
chr5 (114-162)||(15074845-15074894)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 49928751 - 49928991
Alignment:
Q  11 catcatcactcaagaagtaagcttttattcctttttaaatgctttttgttgcacgatcatgagtttattatggcatgcttcgataaacaaccgaattaag 110  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49928751 catcataactcaagaagtaagcttttattcttttttaaatgctttttgttgcacgatcatgagtttattatggcatacttcgataaacaaccgaattaag 49928850  T
Q  111 tgtttatagcataagtgcttttgtataagttatttctataattaaagatagagtcgatttaaattgacttatttgaacttagctcctcacgtaaacactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  49928851 tgtttatagcataagtgcttttgtataagttatttctataattaaagatagagtcaatttaaatcgacttatttgaacttagctcctcacgcaaacactt 49928950  T
Q  211 gtgagactgttttaatttagatagacaaaaagcactcttat 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49928951 gtgagactgttttaatttagatagacaaaaagcactcttat 49928991  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 9477866 - 9477935
Alignment:
Q  92 gataaacaaccgaattaagtgtttatagcataagtgcttt-tgtataagttatttctataattaaagata 160  Q
    ||||||||||  |||||||||||||||||||||||| ||| |||||||| |||||||||||  |||||||    
T  9477866 gataaacaacttaattaagtgtttatagcataagtgatttctgtataagctatttctataacaaaagata 9477935  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 24235851 - 24235783
Alignment:
Q  92 gataaacaaccgaattaagtgtttatagcataagtgcttttgtataagttatttctataattaaagata 160  Q
    ||||||||||  ||||||||||||||| ||||||  ||| ||||||||||||||||||||  |||||||    
T  24235851 gataaacaacttaattaagtgtttataacataagcacttgtgtataagttatttctataacaaaagata 24235783  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 10836737 - 10836791
Alignment:
Q  106 ttaagtgtttatagcataagtgcttttgtataagttatttctataattaaagata 160  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||  |||||||    
T  10836737 ttaagtgtttatagcataagcgcttatgtataagttatatctataacaaaagata 10836791  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 7268088 - 7268024
Alignment:
Q  86 tgcttcgataaacaaccgaattaagtgtttatagcataagtgcttttgtataagttatttctata 150  Q
    ||||| ||||||||||  |||||||||||||||| ||||||| || | |||||||||||| ||||    
T  7268088 tgcttggataaacaacttaattaagtgtttatagtataagtgtttatttataagttatttttata 7268024  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 33818123 - 33818088
Alignment:
Q  104 aattaagtgtttatagcataagtgcttttgtataag 139  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33818123 aattaagtgtttatagcataagtgcttatgtataag 33818088  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 323725 - 323781
Alignment:
Q  104 aattaagtgtttatagcataagtgcttttgtataagttatttctataattaaagata 160  Q
    |||| |||| ||||| |||||||| ||||||||||| |||||||||| | |||||||    
T  323725 aattgagtgcttataacataagtggttttgtataagctatttctatattaaaagata 323781  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 32408825 - 32408865
Alignment:
Q  84 catgcttcgataaacaaccgaattaagtgtttatagcataa 124  Q
    |||| |||||||||||||  |||||||||||||||||||||    
T  32408825 catgtttcgataaacaacttaattaagtgtttatagcataa 32408865  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 21593179 - 21593111
Alignment:
Q  92 gataaacaaccgaattaagtgtttatagcataagtgcttttgtataagttatttctataattaaagata 160  Q
    ||||| |||| |||||| ||| ||||||| ||||||||| |||||||  ||||||||||| ||||||||    
T  21593179 gataagcaactgaattaggtgcttatagcgtaagtgcttatgtataaactatttctataactaaagata 21593111  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 32799878 - 32799834
Alignment:
Q  108 aagtgtttatagcataagtgcttttgtataagttatttctataat 152  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  32799878 aagtgtttatagcataattgcttctgtataagctatttctataat 32799834  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 1561206 - 1561249
Alignment:
Q  117 tagcataagtgcttttgtataagttatttctataattaaagata 160  Q
    |||||||||||||| ||||||||||||||||||||  |||||||    
T  1561206 tagcataagtgcttatgtataagttatttctataacgaaagata 1561249  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 2091695 - 2091727
Alignment:
Q  119 gcataagtgcttttgtataagttatttctataa 151  Q
    |||||||||||| ||||||||||||||||||||    
T  2091695 gcataagtgcttgtgtataagttatttctataa 2091727  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 15074894 - 15074845
Alignment:
Q  114 ttatagcataagtgcttttgtat-aagttatttctataattaaagataga 162  Q
    ||||||||||||||||| | ||| |||||||||||||||| |||||||||    
T  15074894 ttatagcataagtgcttatatatgaagttatttctataataaaagataga 15074845  T

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