View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_18 (Length: 249)
Name: NF16433_low_18
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 29329576 - 29329760
Alignment:
| Q |
1 |
ttctaattatataatttatgatcatattttaa-tttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgt |
99 |
Q |
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| T |
29329576 |
ttctaattatataatttatgaccatattttaaatttaaatgatatggatttgacacttcgtttgattgaccatgtaagcaatgccacgtaggatctatgt |
29329675 |
T |
|
| Q |
100 |
tattaatgaacaggtcacatcattcaaatagga-ggaggctagaatttttcattggc-tttttaaatagggggatcaaaacctaa |
182 |
Q |
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| T |
29329676 |
tattaatgagcaggtcacatcattcaaataagagggaggctagaatttttcattggcttttttaaatagagggatcaaaatctaa |
29329760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 29329415 - 29329240
Alignment:
| Q |
1 |
ttctaattatataat-ttatgatcatattttaatttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgt |
99 |
Q |
| |
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|||||| |||||||| ||||||| ||||| |||||||||||| |||||||||| ||| | ||||||| | | |||| |||| || ||||||| |||| |
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| T |
29329415 |
ttctaagtatataatcttatgattatattctaatttaaatgacatggatttgataccgcatttgattgattacgtaactaatgtcatgtaggatcaatgt |
29329316 |
T |
|
| Q |
100 |
tattaatgaacaggtcacatcattcaaataggagg-aggctagaatttttcattggctttttaaatagggggatca |
174 |
Q |
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| T |
29329315 |
cattaatgagcacgccacatcattcaaataggaggtagattataatttttaattaactttttaaatagggggatca |
29329240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 29329917 - 29329965
Alignment:
| Q |
191 |
agaagggaaacaaagaataaattaaattacatctaactccttatctgtg |
239 |
Q |
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| T |
29329917 |
agaagggaaacaaagaataaattaaattacatccaactgcttatttgtg |
29329965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27298629 - 27298496
Alignment:
| Q |
1 |
ttctaattatataattt-atgatcatattttaatttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| || ||||| || ||||||| |||| |
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| T |
27298629 |
ttctaattatataattttatgatcatatttcaatttaaatgacatggatttgacacctcatttgattgaccatacaaacaatgtcatgtaggatccatgt |
27298530 |
T |
|
| Q |
100 |
tattaatgaacaggtcacatcattcaaataggag |
133 |
Q |
| |
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| T |
27298529 |
tattaatgaacacgccacatcattcaaataggag |
27298496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 27299197 - 27299359
Alignment:
| Q |
17 |
tatgatcatattttaatttaaatgatatggat-ttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgttattaatgaacaggtc |
115 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||||||||| ||||||| || ||||||| |||| ||||| ||||| |||| |||||||| || | | |
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| T |
27299197 |
tatgattatattttaatttaaatgacatggacattgacacctcatttgattgactatgtaagtaatgtcacatgggatccatgtcattaatgagcacgcc |
27299296 |
T |
|
| Q |
116 |
acatcattcaaataggaggag-gctagaatttttcattggctttttaaatagggggatcaaaa |
177 |
Q |
| |
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|
| T |
27299297 |
acatcattcaaataggaggggaacaagaatttttcattgactttttaaacatggggatcaaaa |
27299359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 14501756 - 14501918
Alignment:
| Q |
15 |
tttatgatcatattttaatttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgttattaatgaacaggt |
114 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||| ||||||| || |||||| | || |||||| ||||||||||||| |||| || | |
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| T |
14501756 |
tttatgatcatattttaatttaattgacattgatttgacacctcatttgattgactatgtaaaccgtgtcacatatgatctatgttattcatgagcatgc |
14501855 |
T |
|
| Q |
115 |
cacatcattcaaataggaggaggctagaatttttcattggctttttaaatagggggatcaaaa |
177 |
Q |
| |
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||||| || |||||||||| | ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
14501856 |
cacatattttaaataggaggggattagaatttttcattgactttttaaataaggggatcaaaa |
14501918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19347911 - 19347803
Alignment:
| Q |
1 |
ttctaattatataattt-atgatcatattttaatttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||||||||| || ||| |||| |
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| T |
19347911 |
ttctaattatataattttatgatcatattttaatttaaatgagatggatttgacacctcatttgattgactatgtaagcaatgccacttataatccatgt |
19347812 |
T |
|
| Q |
100 |
tattaatga |
108 |
Q |
| |
|
||||||||| |
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| T |
19347811 |
tattaatga |
19347803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 19348422 - 19348586
Alignment:
| Q |
1 |
ttctaattatataattt-atgatcatattttaatttaaatgatatggatttgacacctcgtttgattaaccatgtaagcaatgccacataggatctatgt |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| || || || ||||| |
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| T |
19348422 |
ttctaattatataattttatgatcatattttaatttaaatgacgtggatttgac------------taaccatgtaagcaatgtcatgtaaaatttatgt |
19348509 |
T |
|
| Q |
100 |
tattaatgaacaggtcacatcattcaaataggaggaggctagaatttttcattggctttttaaatagggggatcaaaa |
177 |
Q |
| |
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|||||| || | | ||||||| |||||||||||| | |||||||||||||||| ||||||||| | |||||| |||| |
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| T |
19348510 |
tattaacgagaacgccacatca-tcaaataggaggggactagaatttttcattgactttttaaacaaggggataaaaa |
19348586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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