View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_19 (Length: 239)
Name: NF16433_low_19
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44298407 - 44298636
Alignment:
| Q |
1 |
acaggcccactcctgatattggttcatcatcagaatctactttcagtgaatctaaaacaacctccaatgcaacagaagacccttttaagatatttgaatc |
100 |
Q |
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| T |
44298407 |
acaggcccactcctgatattggttcatcatcagaatctactttcagtgaatctaaaacaacctccaatgcaacagaagacccttttaagatatttgaatc |
44298506 |
T |
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| Q |
101 |
agcttccgctccaaatgattcatcctcaggccacttttcagacccattagaagatattagtaattttactagttctagaagcacaaaaaatgatggtttg |
200 |
Q |
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| T |
44298507 |
agcttccgctccaaatgattcatcctcaggccacttttcagacccattagaagatattagtaattttactagttctagaagcacaaaaaatgatggtttg |
44298606 |
T |
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| Q |
201 |
tcaaattctaatggcgcagtatatgatgat |
230 |
Q |
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| T |
44298607 |
tcaaattctaatggcacagtatatgatgat |
44298636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 39328019 - 39328165
Alignment:
| Q |
45 |
agtgaatctaaaacaacctccaatgcaacagaagacccttttaagatatttgaatcagcttccgctccaaatgattcatcctcaggccacttttcagacc |
144 |
Q |
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| T |
39328019 |
agtgcatctaaaacaacctccactgcagcagaagaccctttgaaagtatatgaatcaacttcagccccaatggattcatccacaagcaactttacagacc |
39328118 |
T |
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| Q |
145 |
cattagaagatattagtaattttactagttctagaagcacaaaaaat |
191 |
Q |
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| T |
39328119 |
cttttgaagaaattagtaaatttaatggttctagaagcacaaaaaat |
39328165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 39419326 - 39419472
Alignment:
| Q |
45 |
agtgaatctaaaacaacctccaatgcaacagaagacccttttaagatatttgaatcagcttccgctccaaatgattcatcctcaggccacttttcagacc |
144 |
Q |
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|||| ||||||||||||||||| | | |||||||||| || || ||||| |||| |||| || |||| ||||||||| | || |||| |||||| |
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| T |
39419326 |
agtgcatctaaaacaacctccatcgaagcagaagacccattcaaagtattttcatcaacttcagccccaatggattcatccagaagcaacttcacagacc |
39419425 |
T |
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| Q |
145 |
cattagaagatattagtaattttactagttctagaagcacaaaaaat |
191 |
Q |
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| || ||||| |||||||| |||| ||||||||||||||| |||||| |
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| T |
39419426 |
ctttggaagaaattagtaaatttagtagttctagaagcactaaaaat |
39419472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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