View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_21 (Length: 235)
Name: NF16433_low_21
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 29329402 - 29329554
Alignment:
| Q |
29 |
ttatataattagaatttaaataaaaatttgaagagnnnnnnnnnnaatcattcaagaagcctaatttgtgaaatccataagttgattctcaatgtgtccc |
128 |
Q |
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| T |
29329402 |
ttatatacttagaatttaaataaaaatttgaagagttttttttttaattattcaagaaacctaatttgtgaaatccccaagttgattctcactgtgtccc |
29329501 |
T |
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| Q |
129 |
taaatctgaaattaatcagccttccttcttcttgaataacataagacatttta |
181 |
Q |
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| T |
29329502 |
taaatctgaaattaatcagccttccatcttcttgaataacataagacatttta |
29329554 |
T |
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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 19348386 - 19348303
Alignment:
| Q |
78 |
attcaagaagcctaatttgtgaaatccataagttgattctcaatgtgtccctaaatctgaaattaatcagccttccttcttctt |
161 |
Q |
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| T |
19348386 |
attcaagaacactaatttgtaaaatcctcgaattgattctcaatgagcccctaaatctaaaattaatcagccttccttcttctt |
19348303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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