View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16433_low_3 (Length: 516)
Name: NF16433_low_3
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5713382 - 5713813
Alignment:
| Q |
1 |
taggaaaaggagaaacattactatgggcatggaagagatacaaagaagttgatcagtcaatgatagagatacatgcaaaaagtgtcactaatggtctcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5713382 |
taggaaaaggagaaacattaatatgggcatggaagagatacaaagaagttgatcagtcaatgatagagatacatgcaaaaagtgtcactaatggtctcat |
5713481 |
T |
|
| Q |
101 |
cattatgctagggaaagtagagatgtgtcgttttctgcggtgtaatggaagcattgttaggcactacacaagcggtatcatcaatgtcgaagagccagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5713482 |
cattatgctagggaaagtagagatgtgtcgttttctgcggtgtaatggaagcattgttaggcactacacaagcggtatcatcaatgtcgaagagccagtg |
5713581 |
T |
|
| Q |
201 |
aaaagcttgaaaaggtgggtctcatgcaggctggacgaggacgacccatcaccacccaaaaatctgccgaatttgactgc--ttgtggttgggaacagat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5713582 |
aaaagcttgaaaaggtgggtctcatgcaggctggacgaggacgacccatcaccactcaaaaatctgtcgaatttgactgcttttgtggttgggaacagat |
5713681 |
T |
|
| Q |
299 |
catagacattgacagagctcttgttcatccacagccagaattgctagatgcagttcgcggtgcaaggaccgaagaaaccactaccatgaaggtagaaata |
398 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5713682 |
catagacattgacatagctcttgttcatccacagccagaattgctagatgcagttcgcggtgcaaggaccgaagaaaccactaccatgaaggtagttata |
5713781 |
T |
|
| Q |
399 |
ccatatcacctgcagtttggttcacacggttt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5713782 |
ccatatcacctgcagtttggttcacacggttt |
5713813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University