View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_4 (Length: 501)
Name: NF16433_low_4
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 54987554 - 54987967
Alignment:
| Q |
18 |
aaagtaagagaaagctaaaatgaacaaaataaaatataactttgtttgacaacgttatccactaacattagtagtgaatttgcgtaggtgagcagttttt |
117 |
Q |
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| T |
54987554 |
aaagtaagagaaagctaaaatgaacaaaataaaatataactttgtttgaca-cgttatccactaacattagtagtgaatttgcgtaggtgagcagttttt |
54987652 |
T |
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| Q |
118 |
tgaaatttcggtgcaatcatacatttcctttgggtgaaataaattttggtgaaatattagtactggaattggcttttgggtcccagtggttggtgcagag |
217 |
Q |
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| T |
54987653 |
tgaaatttcggtgcaatcatacatttcctttgggtgaaataaattttggtgaaatattagtactggaattggcttttgggtcccggtggttggtgcagag |
54987752 |
T |
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| Q |
218 |
ttggtcttcaatcatttaaacagtatctatggtgtttaagaatatgaaattttctttgacattaattgatttgagagtatcaattagtttgaagttatct |
317 |
Q |
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| T |
54987753 |
ttggtcttcaatcatttaaacagtatctatggtg-ttaagaatatgaaattttctttgacattaattgagttgagagcatcaattagtttgaagttatct |
54987851 |
T |
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| Q |
318 |
acttttcagaaagcagtatctatggagatactactactctttttcttaatcactacctatgctcttggagcattctcattctcagtggagtttgatcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54987852 |
acttttcagaaagcagtatctatggagatactgctactctttttcttaatcactacctatgctcttggagcattctcattctcagaggagtttgatcatt |
54987951 |
T |
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| Q |
418 |
atccttttccatccaa |
433 |
Q |
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| T |
54987952 |
atccttttccatccaa |
54987967 |
T |
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