View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16433_low_6 (Length: 418)
Name: NF16433_low_6
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 128 - 408
Target Start/End: Complemental strand, 30316065 - 30315784
Alignment:
| Q |
128 |
aaagaaaagctgttcatatagtagcatagatgagtattatgagnnnnnnn-tagtagcaagagaggtggcacaaaacttattcttgattaatttattcat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30316065 |
aaagaaaagctgttcatatagtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcat |
30315966 |
T |
|
| Q |
227 |
agtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataatatt |
326 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30315965 |
agtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatt |
30315866 |
T |
|
| Q |
327 |
tgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30315865 |
tgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccctttg |
30315784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 178 - 408
Target Start/End: Complemental strand, 30305147 - 30304918
Alignment:
| Q |
178 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
277 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
|
| Q |
278 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
377 |
Q |
| |
|
| | ||||| ||| |||||||| ||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30304949 |
T |
|
| Q |
378 |
tctggcttcgaccttcttccctttccctttg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30304948 |
tctggcttcgaccttcttccctttccctttg |
30304918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 189 - 408
Target Start/End: Complemental strand, 30287462 - 30287250
Alignment:
| Q |
189 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
288 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| | |
|
|
| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
|
| Q |
289 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30287270 |
T |
|
| Q |
389 |
ccttcttccctttccctttg |
408 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30287269 |
ccttcttccctttccctttg |
30287250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 126 - 408
Target Start/End: Complemental strand, 30300402 - 30300126
Alignment:
| Q |
126 |
gaaaagaaaagctgttcatatagtagcatagatgagtattatgagnnnnnnn-tagtagcaagagaggtggcacaaaacttattcttgattaatttattc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300402 |
gaaaagaaaagctgttcatatagtagcatagatgagtattatgaaaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattc |
30300303 |
T |
|
| Q |
225 |
atagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataata |
324 |
Q |
| |
|
|| || ||| ||||||||||||| || ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
30300302 |
atggtggaaa-ggtggaactctagata------caagatattgccgttttattctctgctcactatgagctatgactccttacagcatacaagcataata |
30300210 |
T |
|
| Q |
325 |
tttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctttg |
408 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30300209 |
tttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgaccttcttccctttccctttg |
30300126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 189 - 408
Target Start/End: Complemental strand, 30292485 - 30292284
Alignment:
| Q |
189 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
288 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
|
| Q |
289 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
388 |
Q |
| |
|
||||| |||| |||||||| ||||||| | |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292386 |
atgag---------cttagagcatacaagcataat--------aagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
|
| Q |
389 |
ccttcttccctttccctttg |
408 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30292303 |
ccttcttccctttccctttg |
30292284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 30305207 - 30305166
Alignment:
| Q |
126 |
gaaaagaaaagctgttcatatagtagcatagatgagtattat |
167 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30305207 |
gaaaagaaaagcggttcatatagtagcatagatgactattat |
30305166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University