View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_8 (Length: 383)
Name: NF16433_low_8
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 139 - 346
Target Start/End: Complemental strand, 51120005 - 51119798
Alignment:
| Q |
139 |
ctcaagagactgaattatttgctgcaataatatgttaatggtactagaaataagtttattgcttgcaaaaataaatttattggcttcctaaataagttta |
238 |
Q |
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| T |
51120005 |
ctcaagagactgaattatttgctgcaataatatgttaatggtactagaaataagtttattgcttgcaaaaataaatttattggcttcctaaataagttta |
51119906 |
T |
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| Q |
239 |
ttttctgcaagaatgataatactggctggaaaaataagtttatcgtttgcaaaaatatatttattgactgaccacttaaggatattgcattcaaaaagat |
338 |
Q |
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| T |
51119905 |
ttttctgcaagaatgataatactggctggaaaaataagtttatcgtttgcaaaaatatatttattgactgaccacttaaggatattgcattcaaaaatat |
51119806 |
T |
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| Q |
339 |
gtttattg |
346 |
Q |
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| T |
51119805 |
atttattg |
51119798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 51119671 - 51119565
Alignment:
| Q |
152 |
attatttgctgcaataatatgttaat-ggtactagaaataagtttattgcttgcaaaa-----ataaatttattggcttcctaaataagtttattttctg |
245 |
Q |
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| T |
51119671 |
attatttgttgcaataatatgtttattggtaccaaaaataagtttattgattgcaaaaaaaataaaaaataattggcttcctaaataagtatattttcta |
51119572 |
T |
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| Q |
246 |
caagaat |
252 |
Q |
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| T |
51119571 |
caagaat |
51119565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 51119753 - 51119704
Alignment:
| Q |
318 |
ggatattgcattcaaaaagatgtttattgttcgcgacactaagattattg |
367 |
Q |
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| T |
51119753 |
ggatattgcattaaaaaatatgtttattgtttgccacaataagattattg |
51119704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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