View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16433_low_9 (Length: 380)
Name: NF16433_low_9
Description: NF16433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16433_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 26 - 352
Target Start/End: Original strand, 32085715 - 32086058
Alignment:
| Q |
26 |
aaatgtgtcgaaatgcacatcataaagtcaaatagaaagcatgtcataaaatatttccataatcaatcatgcctgcacaataatcatataatcatat--t |
123 |
Q |
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| T |
32085715 |
aaatgtgtcgaaatgcacatcataaagtcaaatagaaagcatggcataaaatatttccataatcaatcatgcctgcacaataatcatataatcatatatt |
32085814 |
T |
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| Q |
124 |
tcgtactttaagagtaaccacacaacaattataattaagtcagaacatataaaattcaggttcacaacaaattcttagcctaatggactaacgatactaa |
223 |
Q |
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| T |
32085815 |
tcatactttaagagtaaccacacaacaattataattaagtcagaacatataaaattcaggttcacaacaaattcttagcctaatggactaacgatactaa |
32085914 |
T |
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| Q |
224 |
gactagctagagctaataatcggggatgttacaca---------------acccactcaattcaaccatttgtcaaactttttcaaatttcatggtgatg |
308 |
Q |
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| T |
32085915 |
gactagctagagctaataatcagggatgttacacaacccactatcacagtacccactcaattcaactatttgtcaaactttttcaaatttcatggtgatg |
32086014 |
T |
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| Q |
309 |
tcattgcaatctgttaaaatttcatggtacatcgagcttcatgc |
352 |
Q |
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| T |
32086015 |
tcattgcaatatgttaaaatttcatggtacatcgagcttcatgc |
32086058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 32084317 - 32084507
Alignment:
| Q |
70 |
cataaaatatttccataatcaatcatgcctgcacaataatcatataatcatatttcgtactttaagagtaaccacacaacaattataattaagtcagaac |
169 |
Q |
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| T |
32084317 |
cataaaatgttttcataaccaatcttgcttgcacaatcatcatataatcatatttaaaacctttagagtaaccacataacaattgtaattatgtctga-- |
32084414 |
T |
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| Q |
170 |
atataaaattcaggttcacaacaaattcttagcctaatggactaacgatactaagactagctagagctaataatcggggatgttacacaacccact |
265 |
Q |
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| T |
32084415 |
---taaaattcaggttcacatcaagttcaaagcctaatggactaaagatgctaagactagttagagcaaatgaccagggatgttacatagcccact |
32084507 |
T |
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