View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_high_1 (Length: 603)
Name: NF16434_high_1
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_high_1 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 13811 - 14078
Alignment:
| Q |
16 |
agttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaacctggaacgttatctgttgtatgtgaagtggctttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13811 |
agttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaacctggaacgttatctgttgtatgtgaagtggctttg |
13910 |
T |
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| Q |
116 |
gcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacctcgtgacccttttaatcatgtctagtccttgggtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13911 |
tcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacttcgtgacccttttaatcatgtctagtccttgggtac |
14010 |
T |
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| Q |
216 |
tgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtacaacttccatccag |
283 |
Q |
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| T |
14011 |
tgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtacaacttccatccag |
14078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 349 - 568
Target Start/End: Original strand, 14144 - 14363
Alignment:
| Q |
349 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14144 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
14243 |
T |
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| Q |
449 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttctaagacatacattc |
548 |
Q |
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| T |
14244 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttctaagacatacattc |
14343 |
T |
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| Q |
549 |
tcttcttgttgggcattgag |
568 |
Q |
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|||||||||| ||||||||| |
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| T |
14344 |
tcttcttgttaggcattgag |
14363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 42932960 - 42932693
Alignment:
| Q |
16 |
agttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaacctggaacgttatctgttgtatgtgaagtggctttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932960 |
agttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaacctggaacgttatctgttgtatgtgaagtggctttg |
42932861 |
T |
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| Q |
116 |
gcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacctcgtgacccttttaatcatgtctagtccttgggtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42932860 |
tcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacttcgtgacccttttaatcatgtctagtccttgggtac |
42932761 |
T |
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| Q |
216 |
tgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtacaacttccatccag |
283 |
Q |
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| T |
42932760 |
tgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgagtacaacttccatccag |
42932693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 349 - 603
Target Start/End: Complemental strand, 42932627 - 42932373
Alignment:
| Q |
349 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932627 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
42932528 |
T |
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| Q |
449 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttctaagacatacattc |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
42932527 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttctaagacatacattc |
42932428 |
T |
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| Q |
549 |
tcttcttgttgggcattgagttatgtgccattatcacatttgcagaaacagttcc |
603 |
Q |
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| T |
42932427 |
tcttcttgttgggcattgagttatgtgccattatcacatttgcagaaacagttcc |
42932373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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